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Series GSE73661 Query DataSets for GSE73661
Status Public on Oct 11, 2016
Title The effect of vedolizumab (anti-α4β7-integrin) therapy on colonic mucosal gene expression in patients with ulcerative colitis (UC)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Microarrays were used to investigate the the effect of vedolizumab (VDZ) therapy on colonic mucosal gene expression in UC patients and compared the changes to those observed with infliximab (IFX) therapy.
 
Overall design 120 colonic biopsies from 44 UC patients were collected at protocol-specified time points [week (W) 0, W6, W12 and W52] during two phase 3 trials of VDZ (GEMINI I and LTS). Biopsies were compared with 12 non-IBD colonic biopsies and colonic biopsies from 23 UC patients before and W4-6 after first IFX. Response was defined as endoscopic mucosal healing (Mayo endoscoipc subscore 0 or 1) and was assessed for VDZ at W6/12/52, and for IFX at W4-6. Total RNA extracted from mucosal biopsies was used to analyze mRNA expression via Affymetrix Human Gene 1.0 ST arrays
 
Contributor(s) Arijs I, De Hertogh G, Van Lommel L, Schuit F, Van Assche G, Rutgeerts P, Vermeire S
Citation(s) 27802155
Submission date Oct 01, 2015
Last update date Jul 26, 2018
Contact name Ingrid Arijs
E-mail(s) ingrid.arijs@med.kuleuven.be
Organization name KULeuven
Department Clinical and Experimental Medicine
Lab TARGID - IBD Leuven
Street address Herestraat 49
City Leuven
ZIP/Postal code 3000
Country Belgium
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (178)
GSM1900148 Bp069_Active UC W0_IFX_43
GSM1900149 Bp072_UC NR W4/6_IFX_43
GSM1900150 Bp073_Control_2
Relations
BioProject PRJNA297578

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE73661_RAW.tar 731.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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