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Series GSE65171 Query DataSets for GSE65171
Status Public on Jul 01, 2015
Title NF-κB activation impairs somatic cell reprogramming in ageing [IKBA-SR]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Transcriptional profiling of human Néstor-Guillermo Progeria Syndrome (NGPS) fibroblasts control, treated with sodium salicylate or transduced with Ikappa B alpha super-repressor.

Somatic cell reprogramming involves rejuvenation of adult cells and relies on the ability to erase age-associated molecular marks. Accordingly, reprogramming efficiency declines with ageing, and age-associated features such as genetic instability, cell senescence or telomere shortening negatively affect this process. However, the regulatory mechanisms that constitute age-associated barriers for cell reprogramming remain largely unknown. Here, by using cells from patients with premature ageing, we demonstrate that NF-κB activation is a critical barrier for the generation of induced pluripotent stem cells (iPSCs) in ageing. We show that NF-κB repression occurs during cell reprogramming towards a pluripotent state. Conversely, ageing-associated NF-κB hyperactivation impairs generation of iPSCs by eliciting reprogramming repressors DOT1L and YY1, reinforcing cell senescence signals and down-regulating pluripotency genes. We also show that genetic and pharmacological NF-κB inhibitory strategies significantly increase the reprogramming efficiency of fibroblasts from Néstor-Guillermo Progeria Syndrome (NGPS) and Hutchinson-Gilford Progeria Syndrome (HGPS) patients, as well as from normal aged donors. Finally, we demonstrate that DOT1L inhibition in vivo ameliorates the accelerated ageing phenotype and extends lifespan in a progeroid animal model. Collectively, our results provide evidence for a novel role of NF-κB in the control of cell fate transitions and reinforce the interest of studying age-associated molecular impairments to implement cell reprogramming methodologies, and to identify new targets of rejuvenation strategies.
 
Overall design Human NGPS fibroblasts were treated with sodium salicylate, transduced with Ikappa B alpha super-repressor or left untreated. RNA was extracted and transcriptional profiling was obtained with GeneChip Human Gene 2.0 ST Arrays.
 
Contributor(s) Osorio FG, Soria-Valles C, Freije JM, Lopez-Otin C
Citation(s) 26214134
Submission date Jan 21, 2015
Last update date Sep 30, 2015
Contact name Jose M.P. Freije
E-mail(s) jmpf@uniovi.es
Phone 34-985106281
Organization name Universidad de Oviedo
Department Bioquimica y Biologia Molecular
Lab IUOPA
Street address C/ Fernando Bongera s/n
City Oviedo
State/province Asturias
ZIP/Postal code 33006
Country Spain
 
Platforms (1)
GPL19251 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [probe set (exon) version]
Samples (3)
GSM1588586 Untreated NGPS Fibroblasts
GSM1588587 NaS NGPS Fibroblasts
GSM1588588 IkBa-SR NGPS Fibroblasts
This SubSeries is part of SuperSeries:
GSE65173 NF-κB activation impairs somatic cell reprogramming in ageing
Relations
BioProject PRJNA273327

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE65171_RAW.tar 24.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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