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Series GSE50834 Query DataSets for GSE50834
Status Public on Mar 05, 2014
Title Gene expression analysis of PBMC from HIV and HIV/TB co-infected patients
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Diagnosis of TB, especially in the presence of an HIV co-infection, can be challenging when using conventional diagnostic methods. In this study, we analyzed global gene expression data from PBMC of patients that were either mono-infected with HIV or co-infected with HIV and TB in order to identify a TB-specific gene signature.
 
Overall design Total RNA obtained from PBMC from a South African cohort. Microarry analysis was performed to compare gene expression in patients either infected with HIV or co-infected with HIV/TB.
 
Contributor(s) Dawany N, Showe LC, Kossenkov AV, Chang C, Ive P, Conradie F, Stevens W, Sanne I, Azzoni L, Montaner LJ
Citation(s) 24587128
Submission date Sep 12, 2013
Last update date Aug 13, 2018
Contact name Louise C Showe
E-mail(s) lshowe@wistar.org
Phone 215-898-3791
Organization name The Wistar Institute
Lab Dr. Louise Showe
Street address 3601 Spruce St
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (44)
GSM1230902 HIV infected patient 1
GSM1230903 HIV infected patient 2_1
GSM1230904 HIV infected patient 2_2
Relations
BioProject PRJNA219132

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50834_RAW.tar 26.2 Mb (http)(custom) TAR
GSE50834_non-normalized.txt.gz 12.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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