 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 30, 2014 |
| Title |
Expression data from early and late vegetative stages from rice hybrid and its parents |
| Platform organism |
Oryza sativa |
| Sample organism |
Oryza sativa Indica Group |
| Experiment type |
Expression profiling by array
|
| Summary |
Heterosis is a complex phenomenon governed by many phenotypes in combination. In comparative account of the different stages a better understanding regulating this phenomenon in terms of gene action can be ascertained.
We used microarrays to ascertained the kind and extent of gene actions in the different developmental stages to reach to the conclusion of contribution of different mode of gene actions.
|
| |
|
| Overall design |
A total of 45 arrays representing in triplicates of each five developmental stages of an Indica hybrid and its parents five vegetative developmental stages. Indica hybrid (MRP5401) has been take along with its parents (female parent PMS80 (B Line) and male parent PR319 (R line)) and five stages are selected for rna extraction and hybridization on Affymetirx microarray comprising young leaf (Leaves of 14-days-old seedling), young root (Roots of 14-days-old seedlings), Leaves of 40-60-days-old plants, Roots of 40-60-days-old plants and Flag Leaves of 90-days-old plants. Further these stages are named accordingly as YL_B, YL_H, YL_R (Leaves of 14-days-old seedlings of B parent, hybrid and R parent), YR_B, YR_H, YR_R (Roots of 14-days-old seedlings of B parent, hybrid and R parent), ML_B, ML_H, ML_R (Leaves of 40-60-days-old plants of B parent, hybrid and R parent), BMR, HMR, RMR (Roots of 40-60-days-old plants of B parent, hybrid and R parent) and BFL, HFL, RFL (Flag leaves of 90-days-old B parent, hybrid and R parent).
Development course
|
| |
|
| Contributor(s) |
Baranwal VK, Manupriya M, Umate P, Mikkilineni V, Zehr UB, Tyagi AK, Kapoor S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Apr 02, 2013 |
| Last update date |
Dec 27, 2017 |
| Contact name |
Sanjay Kapoor |
| E-mail(s) |
kapoors@genomeindia.org
|
| Phone |
91 11 65171135
|
| URL |
http://www.dpmb.ac.in/
|
| Organization name |
University of Delhi South Campus
|
| Department |
Department of Plant Molecular Biology
|
| Street address |
Benito Juarez Road
|
| City |
New Delhi |
| State/province |
Delhi |
| ZIP/Postal code |
110021 |
| Country |
India |
| |
|
| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
|
| Samples (45)
|
| GSM1112448 |
Young Root of hybrid, biological rep1 |
| GSM1112449 |
Young Root of hybrid, biological rep2 |
| GSM1112450 |
Young Root of hybrid, biological rep3 |
| GSM1112451 |
Mature Leaf of hybrid, biological rep1 |
| GSM1112452 |
Mature Leaf of hybrid, biological rep2 |
| GSM1112453 |
Mature Leaf of hybrid, biological rep3 |
| GSM1112454 |
Mature Root of hybrid, biological rep1 |
| GSM1112455 |
Mature Root of hybrid, biological rep2 |
| GSM1112456 |
Mature Root of hybrid, biological rep3 |
| GSM1112457 |
Flag Leaf of hybrid, biological rep1 |
| GSM1112458 |
Flag Leaf of hybrid, biological rep2 |
| GSM1112459 |
Flag Leaf of hybrid, biological rep3 |
| GSM1112460 |
Young Leaf of B-Line, biological rep1 |
| GSM1112461 |
Young Leaf of B-Line, biological rep2 |
| GSM1112462 |
Young Leaf of B-Line, biological rep3 |
| GSM1112463 |
Young Root of B-Line, biological rep1 |
| GSM1112464 |
Young Root of B-Line, biological rep2 |
| GSM1112465 |
Young Root of B-Line, biological rep3 |
| GSM1112466 |
Mature Leaf of B-Line, biological rep1 |
| GSM1112467 |
Mature Leaf of B-Line, biological rep2 |
| GSM1112468 |
Mature Leaf of B-Line, biological rep3 |
| GSM1112469 |
Mature Root of B-Line, biological rep1 |
| GSM1112470 |
Mature Root of B-Line, biological rep2 |
| GSM1112471 |
Mature Root of B-Line, biological rep3 |
| GSM1112472 |
Flag Leaf of B-Line, biological rep1 |
| GSM1112473 |
Flag Leaf of B-Line, biological rep2 |
| GSM1112474 |
Flag Leaf of B-Line, biological rep3 |
| GSM1112475 |
Young Leaf of R-Line, biological rep1 |
| GSM1112476 |
Young Leaf of R-Line, biological rep2 |
| GSM1112477 |
Young Leaf of R-Line, biological rep3 |
| GSM1112478 |
Young Root of R-Line, biological rep1 |
| GSM1112479 |
Young Root of R-Line, biological rep2 |
| GSM1112480 |
Young Root of R-Line, biological rep3 |
| GSM1112481 |
Mature Leaf of R-Line, biological rep1 |
| GSM1112482 |
Mature Leaf of R-Line, biological rep2 |
| GSM1112483 |
Mature Leaf of R-Line, biological rep3 |
| GSM1112484 |
Mature Root of R-Line, biological rep1 |
| GSM1112485 |
Mature Root of R-Line, biological rep2 |
| GSM1112486 |
Mature Root of R-Line, biological rep3 |
| GSM1112487 |
Flag Leaf of R-Line, biological rep1 |
| GSM1112488 |
Flag Leaf of R-Line, biological rep2 |
| GSM1112489 |
Flag Leaf of R-Line, biological rep3 |
|
| Relations |
| BioProject |
PRJNA195934 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE45718_RAW.tar |
205.9 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
|
|
|
|
 |
Less...
More...