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Status
Public on May 05, 2005
Title
[Rice] Affymetrix Rice Genome Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Oryza sativa
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array contains probes to query 51,279 transcripts representing two rice cultivars, with approximately 48,564 japonica transcripts and 1,260 transcripts representing the indica cultivar.This array contains probes to query 51,279 transcripts representing two rice cultivars, with approximately 48,564 japonica transcripts and 1,260 transcripts representing the indica cultivar. This unique design was created within the Affymetrix GeneChip Consortia Program and provides scientists with a single array that can be used for the study of rice. High-quality sequence data were derived from GenBank mRNAs, TIGR gene predictions, and the International Rice Genome sequencing project. The arrays were designed using NCBI UniGene Build #52, (May 7, 2004) incorporating predicted genes from GenBank and the TIGR Os1 v2 data set. (ftp.tigr.org FASTA, 89.3 MB) Annotations derived from Affymetrix CSV file dated 4/01/2005
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=rice http://www.affymetrix.com/analysis/index.affx
Submission date
May 05, 2005
Last update date
Dec 27, 2017
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (3606)
GSM67052 , GSM67053 , GSM67054 , GSM67055 , GSM67056 , GSM67057
GSM67058 ,
GSM67059 ,
GSM67060 ,
GSM67061 ,
GSM67062 ,
GSM99858 ,
GSM99859 ,
GSM99860 ,
GSM99861 ,
GSM99862 ,
GSM99863 ,
GSM99864 ,
GSM99865 ,
GSM99866 ,
GSM99867 ,
GSM99868 ,
GSM99869 ,
GSM99870 ,
GSM99871 ,
GSM99872 ,
GSM99873 ,
GSM99874 ,
GSM99875 ,
GSM99877 ,
GSM99878 ,
GSM99879 ,
GSM99880 ,
GSM99881 ,
GSM99882 ,
GSM100439 ,
GSM100440 ,
GSM100441 ,
GSM100442 ,
GSM100443 ,
GSM100444 ,
GSM100445 ,
GSM100446 ,
GSM116195 ,
GSM116398 ,
GSM116399 ,
GSM116400 ,
GSM116401 ,
GSM116402 ,
GSM149409 ,
GSM149410 ,
GSM149411 ,
GSM149412 ,
GSM154829 ,
GSM154831 ,
GSM154832 ,
GSM154833 ,
GSM154937 ,
GSM154938 ,
GSM154939 ,
GSM154940 ,
GSM154941 ,
GSM154942 ,
GSM154943 ,
GSM154944 ,
GSM154945 ,
GSM154946 ,
GSM154947 ,
GSM154948 ,
GSM154949 ,
GSM154950 ,
GSM154951 ,
GSM154952 ,
GSM154953 ,
GSM154954 ,
GSM154955 ,
GSM154956 ,
GSM154957 ,
GSM154958 ,
GSM154959 ,
GSM154960 ,
GSM159172 ,
GSM159173 ,
GSM159177 ,
GSM159178 ,
GSM159179 ,
GSM159180 ,
GSM159181 ,
GSM159182 ,
GSM159183 ,
GSM159184 ,
GSM159185 ,
GSM159186 ,
GSM159187 ,
GSM159188 ,
GSM159189 ,
GSM159190 ,
GSM159191 ,
GSM159192 ,
GSM159193 ,
GSM159194 ,
GSM159195 ,
GSM159196 ,
GSM159197 ,
GSM159198 ,
GSM159199 ,
GSM159200 ,
GSM159201 ,
GSM159202 ,
GSM159203 ,
GSM159204 ,
GSM159205 ,
GSM159206 ,
GSM159207 ,
GSM159208 ,
GSM159209 ,
GSM159210 ,
GSM159211 ,
GSM159212 ,
GSM159213 ,
GSM159214 ,
GSM159215 ,
GSM159216 ,
GSM159217 ,
GSM159218 ,
GSM159219 ,
GSM159220 ,
GSM159221 ,
GSM159259 ,
GSM159260 ,
GSM159261 ,
GSM159262 ,
GSM159263 ,
GSM159264 ,
GSM159265 ,
GSM159266 ,
GSM159267 ,
GSM159268 ,
GSM159269 ,
GSM159270 ,
GSM159271 ,
GSM159272 ,
GSM173080 ,
GSM173086 ,
GSM173089 ,
GSM173091 ,
GSM173093 ,
GSM173094 ,
GSM174883 ,
GSM174884 ,
GSM174885 ,
GSM174886 ,
GSM174887 ,
GSM174888 ,
GSM174889 ,
GSM174890 ,
GSM195218 ,
GSM195219 ,
GSM195220 ,
GSM195221 ,
GSM195222 ,
GSM195223 ,
GSM195224 ,
GSM195225 ,
GSM195226 ,
GSM195227 ,
GSM195228 ,
GSM195229 ,
GSM195230 ,
GSM203238 ,
GSM203239 ,
GSM203240 ,
GSM203241 ,
GSM203242 ,
GSM203243 ,
GSM207558 ,
GSM207559 ,
GSM207560 ,
GSM207562 ,
GSM207563 ,
GSM207564 ,
GSM207565 ,
GSM207566 ,
GSM207567 ,
GSM240994 ,
GSM240995 ,
GSM240996 ,
GSM240997 ,
GSM240998 ,
GSM240999 ,
GSM254091 ,
GSM254092 ,
GSM254093 ,
GSM254095 ,
GSM254096 ,
GSM254097 ,
GSM255762 ,
GSM255763 ,
GSM261998 ,
GSM261999 ,
GSM262000 ,
GSM262001 ,
GSM262002 ,
GSM262003 ,
GSM262004 ,
GSM262005 ,
GSM262006 ,
GSM262007 ,
GSM262008 ,
GSM262009 ,
GSM262010 ,
GSM262011 ,
GSM262012 ,
GSM262013 ,
GSM262014 ,
GSM262015 ,
GSM262016 ,
GSM262017 ,
GSM262018 ,
GSM262019 ,
GSM262020 ,
GSM262021 ,
GSM267998 ,
GSM267999 ,
GSM275405 ,
GSM275406 ,
GSM275407 ,
GSM275408 ,
GSM275409 ,
GSM275410 ,
GSM275411 ,
GSM275412 ,
GSM275413 ,
GSM275414 ,
GSM275415 ,
GSM275416 ,
GSM278844 ,
GSM278845 ,
GSM278846 ,
GSM278847 ,
GSM278848 ,
GSM278849 ,
GSM278850 ,
GSM278851 ,
GSM278852 ,
GSM278853 ,
GSM278854 ,
GSM278855 ,
GSM281583 ,
GSM281584 ,
GSM281585 ,
GSM281586 ,
GSM281587 ,
GSM281588 ,
GSM302914 ,
GSM302915 ,
GSM302916 ,
GSM302917 ,
GSM302918 ,
GSM302919 ,
GSM302920 ,
GSM302921 ,
GSM302922 ,
GSM302923 ,
GSM304390 ,
GSM304394 ,
GSM304395 ,
GSM304397 ,
GSM304478 ,
GSM304485 ,
GSM304497 ,
GSM304646 ,
GSM304653 ,
GSM304654 ,
GSM304664 ,
GSM304669 ,
GSM304671 ,
GSM304677 ,
GSM345235 ,
GSM345236 ,
GSM345237 ,
GSM345238 ,
GSM345239 ,
GSM345240 ,
GSM345241 ,
GSM345242 ,
GSM345243 ,
GSM345244 ,
GSM345245 ,
GSM351427 ,
GSM351428 ,
GSM351429 ,
GSM351430 ,
GSM351431 ,
GSM351432 ,
GSM351433 ,
GSM351434 ,
GSM351435 ,
GSM351436 ,
GSM351437 ,
GSM351438 ,
GSM351439 ,
GSM351440 ,
GSM351441 ,
GSM351442 ,
GSM351443 ,
GSM351444 ,
GSM351445 ,
GSM351446 ,
GSM351447 ,
GSM351448 ,
GSM351449 ,
GSM351450 ,
GSM351451 ,
GSM351452 ,
GSM357122 ,
GSM357133 ,
GSM357134 ,
GSM357135 ,
GSM357136 ,
GSM357137 ,
GSM357614 ,
GSM357615 ,
GSM357616 ,
GSM357617 ,
GSM357618 ,
GSM357619 ,
GSM357620 ,
GSM357621 ,
GSM357622 ,
GSM357623 ,
GSM357624 ,
GSM357625 ,
GSM357626 ,
GSM357627 ,
GSM357628 ,
GSM357629 ,
GSM357630 ,
GSM357631 ,
GSM357632 ,
GSM357633 ,
GSM357636 ,
GSM357637 ,
GSM357638 ,
GSM357639 ,
GSM357640 ,
GSM357641 ,
GSM357642 ,
GSM357643 ,
GSM357644 ,
GSM357645 ,
GSM357646 ,
GSM357647 ,
GSM357648 ,
GSM357649 ,
GSM357650 ,
GSM357651 ,
GSM357652 ,
GSM357653 ,
GSM357654 ,
GSM357655 ,
GSM357656 ,
GSM357657 ,
GSM357658 ,
GSM357659 ,
GSM357660 ,
GSM357661 ,
GSM357662 ,
GSM357664 ,
GSM357665 ,
GSM357666 ,
GSM357667 ,
GSM357668 ,
GSM357669 ,
GSM357670 ,
GSM357671 ,
GSM357672 ,
GSM357673 ,
GSM357674 ,
GSM357675 ,
GSM357676 ,
GSM357677 ,
GSM357678 ,
GSM357679 ,
GSM357680 ,
GSM357681 ,
GSM357682 ,
GSM357683 ,
GSM357684 ,
GSM357685 ,
GSM357686 ,
GSM357687 ,
GSM357688 ,
GSM359902 ,
GSM359903 ,
GSM359904 ,
GSM359905 ,
GSM359906 ,
GSM359907 ,
GSM359908 ,
GSM359909 ,
GSM359910 ,
GSM359911 ,
GSM359912 ,
GSM359913 ,
GSM359914 ,
GSM359915 ,
GSM359916 ,
GSM359917 ,
GSM359918 ,
GSM359919 ,
GSM359920 ,
GSM359921 ,
GSM359922 ,
GSM359923 ,
GSM359924 ,
GSM365260 ,
GSM365262 ,
GSM365263 ,
GSM365266 ,
GSM365267 ,
GSM365268 ,
GSM366811 ,
GSM366812 ,
GSM366813 ,
GSM366814 ,
GSM366815 ,
GSM366816 ,
GSM366817 ,
GSM366818 ,
GSM366819 ,
GSM366820 ,
GSM366821 ,
GSM366822 ,
GSM368873 ,
GSM377070 ,
GSM377071 ,
GSM377072 ,
GSM377073 ,
GSM377074 ,
GSM377075 ,
GSM377076 ,
GSM377077 ,
GSM377078 ,
GSM377079 ,
GSM377080 ,
GSM377081 ,
GSM377082 ,
GSM377083 ,
GSM377084 ,
GSM377085 ,
GSM377086 ,
GSM378729 ,
GSM378730 ,
GSM378731 ,
GSM387556 ,
GSM387557 ,
GSM387558 ,
GSM387559 ,
GSM387560 ,
GSM387561 ,
GSM387562 ,
GSM387563 ,
GSM387564 ,
GSM399470 ,
GSM399471 ,
GSM399472 ,
GSM399473 ,
GSM402997 ,
GSM402998 ,
GSM402999 ,
GSM403000 ,
GSM403001 ,
GSM403002 ,
GSM403003 ,
GSM403004 ,
GSM403005 ,
GSM403006 ,
GSM403007 ,
GSM403008 ,
GSM403009 ,
GSM403010 ,
GSM403011 ,
GSM403012 ,
GSM409421 ,
GSM409422 ,
GSM409427 ,
GSM409428 ,
GSM409429 ,
GSM409430 ,
GSM409431 ,
GSM409432 ,
GSM409433 ,
GSM409434 ,
GSM409771 ,
GSM409772 ,
GSM409773 ,
GSM409774 ,
GSM409775 ,
GSM409776 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (233)
GSE3053
Rice salt expression
GSE4438
Expression data from rice under salinity stress
GSE4471
Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
GSE5167
Rice seedling hormone treatment
GSE6719
Cytokinin responsive genes in rice
GSE6720
Gene expression in OsRR6-overexpression line
GSE6737
Over-expression of a Type-A Response Regulator Alters Rice Morphology and Cytokinin Metabolism
GSE6893
Expression data for reproductive development in rice
GSE6901
Expression data for stress treatment in rice seedlings
GSE6908
Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
GSE7197
Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
GSE7256
Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
GSE7951
Genome-wide gene expression profiling of rice stigma
GSE8216
Transcriptional profiling of Cellulase induced hypersensitive reaction like response in rice
GSE8380
Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
GSE9498
Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
GSE10054
Expression information of splicing factor OsSKIPa knock-down and overexpressed rice
GSE10373
Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
GSE10857
Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
GSE10872
Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
GSE11025
Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
GSE11175
Comparison of transcriptome profile between wild-type and dst mutant plants
GSE11966
Expression data from rice embryo,endosperm,root,leaf and seedling
GSE12069
Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
GSE12097
antiOsLIC collar chip
GSE13735
Expression data from rice genotypes FL478 and IR29
GSE13988
Rice expression atlas (1): Anther development
GSE14275
Expression data for heat shock in rice seedlings
GSE14298
Rice expression atlas (2): Pollination - Fertilization
GSE14299
Rice expression atlas (3): Early embryogenesis
GSE14300
Rice expression atlas (4): Vegetative tissues
GSE14304
Rice expression atlas: Plant reproductive process
GSE14403
Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
GSE14647
Gene expression in leaf blades of the rice Os-LBD37 overexpressor line RK16331-13
GSE14663
Involvement of the rice LBD37 (OsLBD37) ortholog of Arabidopsis in nitrogen metabolism- and senescence-related processes
GSE14692
Temporal regulatory role of miR156 during leaf development
GSE15046
Transcriptome analysis of gibberellin-signaling mutants in rice [Oryza sativa]
GSE15071
Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
GSE15448
Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
GSE15912
Whole genome transcriptome profiling of Pusa 1266 and Pusa Basmati 1 in panicle primordia stage
GSE16108
Transcription profiling of parental lines and bulked salt sensitive and salt tolerant RILs derived from 2 rice varieties
GSE16265
SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
GSE16341
A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression array: Transcript and Genome Hybridizations
GSE16640
Expression analysis of genes in the lamina joint of lc1 mutant compared with that of wild-type
GSE16793
Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
GSE16865
Heterologous microarrays for the study of drought stress in Musa
GSE17002
Gene expression in mature pollen and sperm cells versus young seedling as a vegetative sporophyte reference control
GSE17169
bulked RILs with high and low grain number per panicle derived from 2 cultivars at panicle primordia stage
GSE17194
Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
GSE17245
Transcriptome analysis of iron and phosphorus interaction in rice seedlings
GSE18361
Temporal gene expression analyisis from rice root (cv. Nipponbare) infected with Magnaporthe oryzae strain Guy11
GSE18529
Expression comparasion of rice seedlings of Osabl1 mutant and WT under ABA treatment
GSE18930
Microarray data from aerial tissue of submergence tolerant M202(Sub1) and intolerant M202
GSE19024
Dissecting the developmental transcriptomes of rice
GSE19239
Transgenic rice line carrying the maize resistance gene Rxo1 to Xanthomonas oryzae pv. oryzicola
GSE19844
affy_xoo_rice-Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice
GSE20522
Genome-wide gene expression of rice cultivar Gui-630 (Indica) X Taiwanjing (Japonica) and mutant lemmata (lem) panicle
GSE21651
Differential expression for salt and drought stress
GSE21772
affy_meloidogyne_rice2-Oryza sativa genes expressed in the early compatible interaction with root-knot nematode
GSE21919
Oryza sativa genes expressed in the early compatible interaction with root-knot nematode (affy_meloidogyne_rice)
GSE22538
Differential expression for rice-gall midge interaction
GSE22564
A global analysis of QTLs for expression variations in rice shoot at early seedling stage
GSE22788
Rice leaf transcriptome from 6 week old plants
GSE23211
Expression data from PSARK::IPT and wildtype rice plants
GSE24048
Expression data from field droughted rice plants
GSE24228
Identification of Rhizome-Specific Genes by Genome-wide Differential Expression Analysis in Oryza longistaminata
GSE24977
Rice Hybrid Weakness is Caused mainly by the Enhanced Stress-Response
GSE25073
Expression data from rice seedlings of wild type and the CHR729 mutant
GSE25176
Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves
GSE25206
Transcriptomic shifts in rice roots in response to Cr (VI) stress
GSE25693
Comparsion of gene expression profile in polaris (pola) mutant lines and its POLARIS (POLA) wild-type at meiotic and ripening stages
GSE26280
Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
GSE26387
Methanol is an endogenous elicitor molecule upon senescence of detached rice leaves
GSE26840
Express data from rice endosperm
GSE27064
Rice endosperm: mRNA profiling and H3K27me3 occupancy
GSE27400
Comparative gene expression in mature egg cell, fertilized egg cell (1-1.5 hap) and fertilized zygote (2.5-3 hap)
GSE27726
Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice
GSE27856
Expression data from rice embryo and endosperm development
GSE27988
genome-wide gene expression profiling of rice pollen in defferent developmetn stages
GSE28012
Whole-Genome Analysis of SSB Larvae Infestation Regulated Rice Genes
GSE28124
Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves
GSE28209
Expression data from transgenic rice with anti-OsPDCD5
GSE28229
Expression data from transgenic rice with OsEATB
GSE28308
A single functional blast resistance gene Pi54 activates complex defense mechanism in Rice
GSE29080
Gene Expression Profiling during Male Gametophyte Development in Rice
GSE29212
MicroRNA Profiles and Their Control of Male Gametophyte Development in Rice
GSE29349
Microarray data of genome-wide gene expression profile in osmads6-1
GSE29577
Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13
GSE29820
Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S between Short Day and Long Day Condition
GSE29967
Expression data from rice after brown planthopper attack
GSE30487
Expression profile of high yielding rice introgression line
GSE30583
Expression data from rice leaves treated or not with fungal elicitors and high-throughput pyrosequencing of endogenous small RNAs from Oryza sativa
GSE30707
Inoculation of rice with the non-host pathogen Puccinia triticina f. sp. tritici elicits an active transcriptional response
GSE30818
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice
GSE30941
Rice gene global expression analysis upon inoculation with different Magnaporthe isolates
GSE30942
Rice gene global expression during nonhost interaction with Blumeria graminis f. sp. hordei (Bgh)
GSE31077
Expression data from rice seeds during low temperature treatment
GSE31200
Transcription profiling of wild type Basmati 370 and its T-DNA insertional mutant OsAPC6.
GSE31248
Transcription profiling of Basmati T-DNA insertional mutant lines
GSE31834
Expression data from shoot bases of rice seedling after gravistimulation
GSE32426
Gene expression profiling of rice embryogenic calli after Agrobacterium infection
GSE33203
DNA microarray data from transgenic rice KMD and its parent XS11
GSE33204
DNA microarray data from transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
GSE33361
Genome-wide gene expression profiling of rice Zhonghua11 and ila1 lamina joint
GSE33411
Resistance gene-dependent responses in rice to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae
GSE33441
Expression data from cynosure (cyn) mutant and its CYNOSURE (CYN) wild-type at before flowering and 5 days after pollination stage
GSE34192
affy_riz_2011_7-: Transcriptomic analysis of rice leaves challenged with virulent and avirulent Xoo strains
GSE34547
Expression data of the Dongjin and osbzip58-1 mutants in the immature endosperm at 9 DAF
GSE35630
GATA Transcription Factor (CGA1) Regulates Chloroplast Development in Rice
GSE35729
Expression data from LRK1 060615 transgenic rice and control 9311
GSE35984
Expression data of one-week-old rice seedlings exposed to Pi-deficient solution for 6, 24, 48, 72 hours
GSE36013
Gene-level expression data from Oryza sativa.indica (mock-treated or blast pathogen treated resistant rice line and susceptible rice line )
GSE36093
Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)
GSE36272
Comparison of transcriptional responses of two susceptible rice cultivars to strains of Xanthomonas oryzae
GSE36320
Transcriptomes of transgenic rice expressing a constitutively active phytochrome OsPHYB-Y283H (OsYHB) allele
GSE36661
Transcriptome analysis of hrf1 transformed rice revealed crosstalk between disease resistance and drought tolerance mediated by Harpin
GSE37161
Expression data from roots of rice seedlings
GSE37557
Gene expression analysis in response to various hormone treatments
GSE37940
Genome-wide Gene Expression Profiling Associated with Seedling Cold Tolerance Improvement in Japonica Rice Background
GSE38023
Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes
GSE38102
Expression data from Oryza sativa and Arabidopsis thaliana
GSE38871
Expression data from IR64 rice transformed with 35S::OsPSTOL1 gene
GSE39298
Comparison of transcriptome profile between wild-type and Epi-df mutant plants
GSE39687
Nitrogen-efficient rice over-expressing alanine aminotransferase
GSE39767
Expression data from OsRP1L1-overexpressing plant leaf in japonica rice (cv. Ishikari-shiroge (I-S))
GSE40242
Activating of jasmonic acid pathway through depletion of rice hydroperoxide lyase OsHPL3 revealed a crosstalk between HPL- and AOS-branch oxylipin pathways in rice
GSE41097
Comparison of transcriptome profile between wild-type and dao mutant plants
GSE41103
Rice Submergence Stress Response
GSE41556
Expression data from rice organs at the reproductive stage
GSE41647
Transcriptome profiling for drought tolerant and susceptible cultivars of indica rice
GSE41648
Expression data for heat tolerant and susceptible cultivars of indica rice
GSE41650
Analysis of the transcriptomes of salt tolerant and susceptible cultivars of indica rice by microarray
GSE41798
Transcriptome study of rice early response to rice blast fungus
GSE42028
Overexpression of OsMADS29 in Oryza sativa var. PB1
GSE42029
Silencing of OsMADS29 in Oryza sativa var. PB1
GSE42367
Expression data of young panicles from microspore mother cell to meiosis of rice
GSE42683
Expression analysis of genes affected by dehydration-responsive transcription factor Os02g31890 from rice.
GSE43050
Expression data in response to Xoo. bacterial infection in rice
GSE43780
affy_compartimentation_rice_albumen_embryon-Transcriptomic study of the rice seed compartimentation during germination
GSE44250
Gene expression analysis of rice seedling under potassium deprivation
GSE45718
Expression data from early and late vegetative stages from rice hybrid and its parents
GSE45724
Microarray analysis of transcriptional responses to alkali stress in two rice genotypes
GSE45751
Identification of rice ethylene-response mutants and characterization of MHZ7 in distinct ethylene response and yield trait regulation
GSE46086
DNA microarray data from root of transgenic rice Huahui 1 (HH1) and its parent Minghui 63 (MH63)
GSE46173
Transcriptional profiles of non-transgenic and OsEREBP1 over-expressed transgenic plants
GSE46334
ovation-Transcriptomic study of rice seed ageing
GSE46342
ivt-Transcriptomic study of rice seed ageing
GSE46616
Expression data from OsEBS-transgenic rice B10201 and B10301 and control Guichao2
GSE46867
Molecular interaction between PHO2 and GIGANTEA reveals a new crosstalk between flowering time and Pi homeostasis in rice
GSE47195
SALT-RESPONSIVE ERF1 expression profiling in rice roots
GSE47812
Gene expression data for rice grain (Oryza sativa L.) aroma performed using bulk pools of aromatic and non-aromatic RILs derived from a cross between Pusa 1121 and Pusa 1342
GSE48069
OsJMJ705 preferentially activates stress-responsive genes
GSE48549
Nitrogen-efficient rice over-expressing alanine aminotransferase at three different N concentrations
GSE48593
Expression data from Oryza sativa 3037 (wild-type) and sd37 (mutant) seedlings
GSE49020
A global analysis of QTLs for expression variations in rice flag leaf at heading date
GSE49242
Gene Expression profiling of rice leaves undergoing an innate immune response induced by XOO secreted cell wall degrading enzyme LipA (Lipase/Esterase A)
GSE49789
Microarray analysis of gene expression in rice lacking cytosolic glutamine synthetase 1;1 and 1;2 grown under the ammonium sufficient condition
GSE49818
Expression data from additional fertilization rice seeds
GSE51151
Expression data from OsSIK2-overexpression and mutant rice seedlings
GSE51152
Identification of rice ethylene-response mutants and characterization of mhz2 and mhz8 in distinct ethylene response and yield trait regulation
GSE51153
Identification of rice ethylene-response mutants and characterization of mhz1, mhz4 and mhz5 in distinct ethylene response and yield trait regulation
GSE51616
Ghd7 is a central regulator for growth, development, adaptation and responses to biotic and abiotic stresses
GSE52159
Differential expression for P and Fe
GSE52640
Transcript profiling of transgenic rice lines where the OsMADS26 gene is over-expressed or down growing cultivated in standard or osmotic stress condition
GSE52836
Expression data from leaf of plant overexpressing OsXa5 in japonica rice (cv. Ishikari-shiroge (I-S))
GSE53272
Transcript profiling in stem base of crown root less 1 mutant after ectopic expression induction by dexamethasome of CRL1
GSE53347
A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58
GSE53535
Expression data from shoots of rice seedlings after inoculation by Sinorhizobium meliloti 1021
GSE53564
Effect of As (V) 50µm in transcription change of six rice genotypes (BRG-12, BRG-15, BRG-20, CN1646-5, NAYANMONI and CN1646-2)
GSE53689
Transcript profiling in rice stem base of wild type and crown root less 1 mutant after auxin treatment
GSE53858
Serious leaf damage caused by Osslac7 mutation arouses self-protection mechanism in rice
GSE53940
Whole genome expression profiling of rice leaves treated with Xanthomonas oryzae pv. oryzae secreted cell wall degrading lipase/esteraseA (LipA) at early time points, 30 min. and 120 min.
GSE54243
Expression data from rice plants showing hybrid weakness syndrome
GSE54466
The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice
GSE55902
Expression data from Rice leaves
GSE56108
Comparative gene expression in synergid cells and antipodal cells at anthesis
GSE56770
Expression data from rice roots treated with Gln
GSE56779
Expression data from rice meiosis-stage young inflorescences
GSE57615
Expression data from early rice endosperm
GSE58007
Microarray for Osrdr1 mutant
GSE58603
Genome-wide Gene Expression Profiling of Salinity Responsiveness in Rice
GSE60823
Expression data from +Pi and -Pi treeatment between WT and spx1spx2 double mutant
GSE61832
Gene expression changes induced in Rice (Oryza sativa) leaves by lipopolysaccharide (LPS) extracted from Xanthomonas oryzae pv. oryzae (Xoo) strain BXO43
GSE61833
Gene expression changes induced in Rice (Oryza sativa) leaves following treatment with any one of the following: wild type Xoo, lipopolysaccharide (LPS) and exopolysaccaride (EPS) deficient Xoo mutant; LPS proficient but EPS deficient Xoo mutant
GSE61952
Expression data from rice lesion mimic mutant spotted leaf 5 (spl5)
GSE62078
Expression data from rice panicles of osmads1 mutant and wild type
GSE62124
Microarray analysis of gene expression in rice lacking cytosolic glutamine synthetase 1;2
GSE62308
Expression data from ABA up-regulated rice under drought stress
GSE64576
Gene expression data of OsGRAS23 overexpression transgenic rice plants under normal and drought stress conditions
GSE69010
Expression data from -Pi treatment between WT, phr1, phr3 and phr1phr2phr3 triple mutant
GSE69235
Rice Gene Network Inferred from Expression Profiling of Plants Carrying Xa3/Xa26.
GSE70526
Expression data from plant tissues during incompatible interaction between the rice host and its major pest, the Asian rice gall midge
GSE70840
Transcriptomic response of rice leaves to 30% CO2 concentration
GSE71680
Expression data of 8 rice accessions under cold stress in seedling stage
GSE74106
Microarray analysis reveals the molecular foundation of the brown planthopper(BPH) resistance of rice variety Rathu Heenati
GSE74745
Expression data from brown planthhoper (BPH) infested and non-infested rice
GSE74795
Comparative Morphophysiological Analyses and Molecular Profiling Reveal ‘Pi-Efficient Strategies’ of a Traditional Rice Genotypefor Low Phosphorus Tolerance in Traditional indica Rice
GSE76178
The gene expression data of OsNPR1 overexpression and its wild type Taipei 309 plants.
GSE78839
Expression data from rice calli cultured with 2,4-D
GSE80184
Expression data from root tips of Wildtype and Osaim1 mutant rice treated with or without salicylic acid (SA)
GSE80246
Expression data from BPH resistant and susceptible rice varieties
GSE82277
Expression data from rice roots treated with Glu
GSE83378
The drought-responsive gene expression in rice panicle
GSE83542
Expression data from panicle in heat tolerant and heat susceptible rice under high temperature stress
GSE83912
Chip data of OsMYB30 overexpression and mutant plants under cold stress
GSE85765
Dissimilar manifestation of heterosis in super hybrid rice at early-tillering stage under nutrient-deficient and nutrient-sufficient condition
GSE85827
Transcriptome profiling of OsFBK1 rice transgenics
GSE86379
Expression data from BPH resistant and susceptible rice varieties
GSE90472
Transcriptome profiling of OsbZIP48 rice transgenics
GSE92883
Drought responsive transcriptome profiling in roots of contrasting rice genotypes IR20 and Nootripathu
GSE92895
Expression data from rice lamina joint development
GSE93917
The NAD kinase OsNADK1 affects the redox and enhances the tolerance to drought in rice
GSE95394
Expression data from susceptible rice cultivar innoculated with Magnaporthe oryzae isolate (Mo-ei-11)
GSE95699
OsCPK21 regulates rice pollen development
GSE98017
Expression data from rice roots treated with NH4NO3
GSE107531
Gene expression profiling from Al treatment in rice root tips
GSE109486
Expression data from rice 10DAF developing seeds from wildtype and strains with high lysine levels
GSE109649
Expression data from rice roots treated with N starvation for 1 h
GSE110068
Transcriptional profiling of rice gene expression changes upon co-infection with insect Orseola oryza and pathogen Xanthomonas oryzae pv. oryzae that causes gall midge and bacterial blight respectively.
GSE110088
Transcriptional profiling of rice gene expression changes upon co-infection with pathogens Magnapothe oryzae and Xanthomonas oryzae pv. oryzae that causes rice blast and bacterial blight respectively.
GSE116322
Expression data from rice inflorescences of osmads32 mutant and wild type
GSE120215
Laser Capture Microdissection (LCM) analysis of mycorrhizal rice roots
GSE126878
Expression data from OsUBA-overexpressed, RNA interferenced, and wild-type rice seedlings
GSE129481
Chip data of OsTMF overexpression plants under cold stress
GSE130821
Gene expression data of OsHMGB707 overexpression and RNAi transgenic rice plants under normal conditions
GSE131287
Genotype variation in rice (Oryza sativa L.) tolerance to Fe toxicity might be linked to root cell wall lignification
GSE136746
Transcriptome dynamics of rice spikelets under heat stress treatment
GSE162302
Differential expression of genes in shoot samples of rice seedlings with contrasting response under low nitrogen
GSE162412
Differential expression of genes in roots of rice seedlings with contrasting response under low nitrogen
GSE166053
Microarray comparative analysis of wild-type and hd1-3 mutant rice
GSE181736
Expression data from rice inflorescences of the sro mutant and wild type
GSE189749
Transcriptional data from overexpression of OsBIERF3 rice
GSE207223
Microarray for Rice Hitomebore
Relations
Affiliated with
GPL11322
Affiliated with
GPL16106 (Alternative CDF [affyricechipalt.cdf])
Alternative to
GPL18620 (Alternative custom CDF)
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
identifies controls
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source
The database from which the sequence used to design this probe set was taken.
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Target Description
GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
GB_ACC
SPOT_ID
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Representative Public ID
Target Description
Gene Title
Gene Symbol
ENTREZ_GENE_ID
RefSeq Transcript ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
AFFX-BioB-3_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioB-3
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-5_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioB-5
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioB-M_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioB-M
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioC-3_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioC-3
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioC-5_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioC-5
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioDn-3_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioDn-3
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-BioDn-5_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-BioDn-5
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
0008152 // metabolic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009102 // biotin biosynthetic process // inferred from electronic annotation /// 0009236 // cobalamin biosynthetic process // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 0004076 // biotin synthase activity // inferred from electronic annotation /// 0004141 // dethiobiotin synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008483 // transaminase activity // inferred from electronic annotation /// 0008710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // inferred from electronic annotation /// 0042242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation
AFFX-CreX-3_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-CreX-3
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation /// 0032196 // transposition // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation
AFFX-CreX-5_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-CreX-5
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
0006310 // DNA recombination // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotation /// 0032196 // transposition // inferred from electronic annotation
0003677 // DNA binding // inferred from electronic annotation
AFFX-DapX-3_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-DapX-3
B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
0001680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AFFX-DapX-5_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-DapX-5
B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
0001680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AFFX-DapX-M_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-DapX-M
B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
0001680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0008033 // tRNA processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008652 // amino acid biosynthetic process // inferred from electronic annotation /// 0009058 // biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation /// 0019242 // methylglyoxal biosynthetic process // inferred from electronic annotation /// 0019877 // diaminopimelate biosynthetic process // inferred from electronic annotation /// 0042245 // RNA repair // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0000049 // tRNA binding // inferred from electronic annotation /// 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 0004810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 0008929 // methylglyoxal synthase activity // inferred from electronic annotation /// 0016437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016564 // transcription repressor activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AFFX-LysX-3_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-LysX-3
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
0008652 // amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation
0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation
AFFX-LysX-5_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-LysX-5
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
0008652 // amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation
0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation
AFFX-LysX-M_at
--control
Oryza sativa
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-LysX-M
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
0008652 // amino acid biosynthetic process // inferred from electronic annotation /// 0009085 // lysine biosynthetic process // inferred from electronic annotation /// 0009089 // lysine biosynthetic process via diaminopimelate // inferred from electronic annotation
0003824 // catalytic activity // inferred from electronic annotation /// 0008836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016831 // carboxy-lyase activity // inferred from electronic annotation
AFFX-Mgr-actin-3_at
--control
Magnaporthe grisea
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-Mgr-actin-3
M. grisea /NOTE=CONTROL MG03982.4 /GEN=MG03982.4 /DB_XREF=gi:38103539 gb:EAA50223.1 /DEF=hypothetical protein similar to ACTG_CEPAC Actin, gamma gi|6002486|gb|AAF00008.1|AF056976_1 gamma-actin (Acremonium chrysogenum) gi|12718452|emb|CAC28718.1| Actin (Neurospora crassa) (15328 - 13567)
AFFX-Mgr-actin-5_at
--control
Magnaporthe grisea
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-Mgr-actin-5
M. grisea /NOTE=CONTROL MG03982.4 /GEN=MG03982.4 /DB_XREF=gi:38103539 gb:EAA50223.1 /DEF=hypothetical protein similar to ACTG_CEPAC Actin, gamma gi|6002486|gb|AAF00008.1|AF056976_1 gamma-actin (Acremonium chrysogenum) gi|12718452|emb|CAC28718.1| Actin (Neurospora crassa) (15328 - 13567)
AFFX-Mgr-actin-M_at
--control
Magnaporthe grisea
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-Mgr-actin-M
M. grisea /NOTE=CONTROL MG03982.4 /GEN=MG03982.4 /DB_XREF=gi:38103539 gb:EAA50223.1 /DEF=hypothetical protein similar to ACTG_CEPAC Actin, gamma gi|6002486|gb|AAF00008.1|AF056976_1 gamma-actin (Acremonium chrysogenum) gi|12718452|emb|CAC28718.1| Actin (Neurospora crassa) (15328 - 13567)
AFFX-Mgr-ef1a-3_at
--control
Magnaporthe grisea
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-Mgr-ef1a-3
M. grisea /NOTE=CONTROL MG03641.4 /GEN=MG03641.4 /DB_XREF=gi:38105647 gb:EAA52046.1 /DEF=hypothetical protein similar to EF1A_PODAN ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) gi|1072496|pir||S43861 translation elongation factor eEF-1 alpha chain
AFFX-Mgr-ef1a-3_x_at
--control
Magnaporthe grisea
Mar 11, 2009
Consensus sequence
Affymetrix Proprietary Database
AFFX-Mgr-ef1a-3
M. grisea /NOTE=CONTROL MG03641.4 /GEN=MG03641.4 /DB_XREF=gi:38105647 gb:EAA52046.1 /DEF=hypothetical protein similar to EF1A_PODAN ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) gi|1072496|pir||S43861 translation elongation factor eEF-1 alpha chain
Total number of rows: 57381 Table truncated, full table size 25027 Kbytes .
Supplementary data files not provided