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Series GSE38039 Query DataSets for GSE38039
Status Public on Sep 24, 2012
Title ZNF750 in late keratinocyte differentiation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Disrupted skin barrier due to altered keratinocyte differentiation is common in pathologic conditions such as atopic dermatitis, ichthyosis and psoriasis. However, the molecular cascades governing keratinocyte terminal differentiation are still poorly understood. We have previously demonstrated that a dominant mutation in ZNF750 leads to a clinical phenotype that reminiscent of psoriasis and seborrheic dermatitis. We defined ZNF750 as a nuclear effector that is strongly activated in and essential for keratinocyte terminal differentiation. ZNF750 knockdown in HaCaT keratinocytes markedly reduced the expression of epidermal late differentiation markers, including gene subsets of epidermal differentiation complex and skin barrier formation such as FLG, LOR, SPINK5, ALOX12B and DSG1, known to be mutated in various human skin diseases. Furthermore, ZNF750 over-expression in undifferentiated cells induced terminal differentiation genes. Thus, ZNF750 is a regulator of keratinocyte terminal differentiation, and with its downstream targets can serve in future elucidation of therapeutics for common disease of skin barrier
 
Overall design Gene expression analysis: To determine the differentaition signature for HaCaT keratinocytes, with ZNF750 gene silencing, total RNA was isolated in biologic triplicates from cells induced to differentiate for twelve days and hybridized to Affymerix Human Gene 1.0 ST arrays.
 
Contributor(s) Cohen I, Birnbaum RY, Birk OS
Citation(s) 22936986
Submission date May 17, 2012
Last update date Jul 26, 2018
Contact name Idan Cohen
E-mail(s) idancoh@post.bgu.ac.il
Organization name Ben Gurion University
Department Dept. of Molecular Genetics and Virology
Lab The Morris Kahn Laboratory of Human Genetics
Street address Ben-Gurion Boulevard
City Beer Sheva
ZIP/Postal code 84105
Country Israel
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (6)
GSM932863 HaCaT_Control_ biological rep1
GSM932864 HaCaT_Control_ biological rep2
GSM932865 HaCaT_Control_ biological rep3
Relations
BioProject PRJNA167082

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Supplementary file Size Download File type/resource
GSE38039_RAW.tar 22.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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