|
Status |
Public on Nov 01, 2011 |
Title |
Sequentially acting Sox transcription factors in neural lineage development [ChIP-seq] |
Organism |
Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
Summary |
We report sequential binding but unique functions of different Sox transcription factors during distinct stages of neural differentiation
|
|
|
Overall design |
Examination of genome-wide Sox2, Sox3 and Sox11 transcription factor binding during different stages of neurogenesis.
|
|
|
Contributor(s) |
Bergsland M, Ramsköld D, Muhr J, Sandberg R |
Citation(s) |
22085726 |
|
Submission date |
Oct 18, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Rickard Sandberg |
E-mail(s) |
Rickard.Sandberg@ki.se
|
Organization name |
Karolinska Institutet
|
Department |
Department of Cell and Molecular Biology
|
Street address |
Berzelius vag 35
|
City |
Stockholm |
ZIP/Postal code |
17177 |
Country |
Sweden |
|
|
Platforms (3) |
GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
GPL11002 |
Illumina Genome Analyzer IIx (Mus musculus) |
GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
Samples (15)
|
GSM818936 |
Sox3 ChIP-Seq in neural progenitor cells, biol repl 1 |
GSM818937 |
Sox3 ChIP-Seq in neural progenitor cells, biol repl 2 |
GSM818938 |
Sox3 ChIP-Seq in neural progenitor cells, biol repl 3 |
GSM818939 |
Sox2 ChIP-Seq in neural progenitor cells, biol repl 1 |
GSM818940 |
Sox2 ChIP-Seq in neural progenitor cells, biol repl 2 |
GSM818941 |
Sox2 ChIP-Seq in neural progenitor cells, biol repl 3 |
GSM818942 |
Sox11 ChIP-Seq in early formed neurons, biol repl 1 |
GSM818943 |
Sox11 ChIP-Seq in early formed neurons, biol repl 2 |
GSM818944 |
Sox11 ChIP-Seq in early formed neurons, biol repl 3 |
GSM818945 |
Control IgG ChIP-Seq in early formed neurons |
GSM818946 |
H3K4me3 ChIP-Seq in Sox3-transfected C2C12 cells |
GSM818947 |
H3K4me3 ChIP-Seq in GFP-transfected C2C12 cells |
GSM818948 |
H3K27me3 ChIP-Seq in Sox3-transfected C2C12 cells |
GSM818949 |
H3K27me3 ChIP-Seq in GFP-transfected C2C12 cells |
GSM818950 |
Sox3 ChIP-Seq in Sox3-transfected C2C12 cells |
|
This SubSeries is part of SuperSeries: |
GSE33024 |
Sequentially acting Sox transcription factors in neural lineage development |
|
Relations |
SRA |
SRP009040 |
BioProject |
PRJNA154419 |