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GEO accession:
Series GSE29290
Query DataSets for GSE29290
Status
Public on Dec 15, 2011
Title
Evaluation of the Infinium Methylation 450K technology
Organism
Homo sapiens
Experiment type
Methylation profiling by genome tiling array
Summary
Genome-wide DNA methylation profiling of HCT116 WT, HCT116 DNMT1 and DNMT3B double KO, and breast cancer tumors by next generation Infinium assay
Overall design
Bisulfite converted DNA from 22 samples were hybridized to the Illumina's HumanMethylation450 BeadChip
Contributor(s)
Dedeurwaerder S
,
Defrance M
,
Calonne E
,
Denis H
,
Sotiriou C
,
Fuks F
Citation(s)
22126295
Submission date
May 13, 2011
Last update date
Mar 22, 2019
Contact name
Matthieu Defrance
Organization name
Université Libre de Bruxelles
Lab
Cancer Epigenetics
Street address
CP614 route de Lennik 808
City
Bruxelles
ZIP/Postal code
1070
Country
Belgium
Platforms (1)
GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (22)
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GSM815136
genomic DNA of HCT116 WT cells (r1)
GSM815137
genomic DNA of HCT116 WT cells (r2)
GSM815138
genomic DNA of HCT116 WT cells (r3)
GSM815139
genomic DNA of HCT116 DKO cells (r1)
GSM815140
genomic DNA of HCT116 DKO cells (r2)
GSM815141
genomic DNA of HCT116 DKO cells (r3)
GSM815142
genomic DNA of normal sample N1
GSM815143
genomic DNA of normal sample N2
GSM815144
genomic DNA of normal sample N3
GSM815145
genomic DNA of normal sample N4
GSM815146
genomic DNA of normal sample N5
GSM815147
genomic DNA of normal sample N6
GSM815148
genomic DNA of normal sample N7
GSM815149
genomic DNA of normal sample N8
GSM815150
genomic DNA of tumor sample BC1
GSM815151
genomic DNA of tumor sample BC2
GSM815152
genomic DNA of tumor sample BC3
GSM815153
genomic DNA of tumor sample BC4
GSM815154
genomic DNA of tumor sample BC5
GSM815155
genomic DNA of tumor sample BC6
GSM815156
genomic DNA of tumor sample BC7
GSM815157
genomic DNA of tumor sample BC8
Relations
BioProject
PRJNA138615
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE29290_Matrix_Processed.txt.gz
46.8 Mb
(ftp)
(http)
TXT
GSE29290_Matrix_Signal.txt.gz
54.8 Mb
(ftp)
(http)
TXT
GSE29290_RAW.tar
183.1 Mb
(http)
(custom)
TAR
Processed data included within Sample table
Processed data are available on Series record
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