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Series GSE29290 Query DataSets for GSE29290
Status Public on Dec 15, 2011
Title Evaluation of the Infinium Methylation 450K technology
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome-wide DNA methylation profiling of HCT116 WT, HCT116 DNMT1 and DNMT3B double KO, and breast cancer tumors by next generation Infinium assay
 
Overall design Bisulfite converted DNA from 22 samples were hybridized to the Illumina's HumanMethylation450 BeadChip
 
Contributor(s) Dedeurwaerder S, Defrance M, Calonne E, Denis H, Sotiriou C, Fuks F
Citation(s) 22126295
Submission date May 13, 2011
Last update date Mar 22, 2019
Contact name Matthieu Defrance
Organization name Université Libre de Bruxelles
Lab Cancer Epigenetics
Street address CP614 route de Lennik 808
City Bruxelles
ZIP/Postal code 1070
Country Belgium
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (22)
GSM815136 genomic DNA of HCT116 WT cells (r1)
GSM815137 genomic DNA of HCT116 WT cells (r2)
GSM815138 genomic DNA of HCT116 WT cells (r3)
Relations
BioProject PRJNA138615

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29290_Matrix_Processed.txt.gz 46.8 Mb (ftp)(http) TXT
GSE29290_Matrix_Signal.txt.gz 54.8 Mb (ftp)(http) TXT
GSE29290_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data included within Sample table
Processed data are available on Series record
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