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Series GSE28393 Query DataSets for GSE28393
Status Public on Apr 06, 2011
Title Aire regulates transfer of antigen from mTEC to dendritic cells for induction of thymic tolerance
Organism Mus musculus
Experiment type Expression profiling by array
Summary To investigate the role of Aire in thymic selection, we examined the cellular requirements for generation of ovalbumin (OVA)-specific CD4 and CD8 T cells in mice expressing OVA under the control of the rat insulin promoter (RIP). Aire-deficiency reduced the number of mature single positive (SP) OVA-specific CD4+ or CD8+ T cells in the thymus, independent of OVA expression. Importantly, it also contributed in two way to OVA-dependent negative selection depending on the T cell type. Aire-dependent negative selection of OVA-specific CD8 T cells correlated with Aire-regulated expression of OVA. By contrast, for OVA-specific CD4 T cells, Aire affected tolerance induction by a mechanism that operated independent of the level of OVA expression, controlling access of antigen presenting cells to mTEC-expressed OVA. This study supports the view that one mechanism by which Aire controls thymic negative selection is by regulating the indirect presentation of mTEC-derived antigens by thymic dendritic cells. It also indicates that mTEC can mediate tolerance by direct presentation of Aireregulated antigens to both CD4 and CD8 T cells.
 
Overall design Total RNA was extracted from medullary thymic epithelial cells isolated from wildtype and Aire-deficient C57BL/6 mice for comparison of gene expression profiles.
 
Contributor(s) Hubert F, Kinkel SA, Davey GM, Phipson B, Mueller SN, Liston A, Proietto AI, Cannon PZ, Forehan S, Smyth GK, Wu L, Goodnow CC, Carbone FR, Scott HS, Heath WR
Citation(s) 21505196
Submission date Apr 05, 2011
Last update date Mar 23, 2012
Contact name Francois-Xavier Hubert
E-mail(s) hubert@wehi.edu.au
Organization name The Walter and Eliza Hall Institute of Medical Research
Department Immunology
Street address 1G Royal Parade
City Melbourne
State/province Victoria
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL6481 Illumina mouse-6 v1.1 expression beadchip [Array_Address_Id version]
Samples (6)
GSM701836 Wildtype 1
GSM701837 Wildtype 2
GSM701838 Aire knock out 1
Relations
BioProject PRJNA139083

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28393_full_normalized_matrix.txt.gz 2.1 Mb (ftp)(http) TXT
GSE28393_non-normalized.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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