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| Status |
Public on Jul 11, 2024 |
| Title |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-Seq] |
| Organism |
Solanum lycopersicum |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Employing high-throughput sequencing and advanced microscopy techniques, we explored twenty-six histone modifications and Pol II distribution landscape in tomato (Solanum lycopersicum). Our findings revealed a comprehensive epigenetic landscape, uncovering distinct chromatin states associated with heterochromatin formation and gene silencing, allowing for the classification of genomic regions.
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| Overall design |
Comparative analysis of ChIP-seq data for tomato M82 wild type and Kyp mutant
**Please note that the sample records have been updated on Oct 9, 2024****
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| Contributor(s) |
Chaouche RB, An J, Wang Q, Huang Y, Benhamed M, Latrasse D |
| Citation(s) |
38968127 |
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| Submission date |
Apr 19, 2024 |
| Last update date |
Oct 12, 2024 |
| Contact name |
Jing An |
| Organization name |
Universite Paris Saclay
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| Street address |
630 Rue Noetzlin
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| City |
Paris |
| ZIP/Postal code |
91190 |
| Country |
France |
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| Platforms (1) |
| GPL21762 |
Illumina NextSeq 500 (Solanum lycopersicum) |
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| Samples (8)
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| GSM8561893 |
Kyp, H3K9me2, Rep1 |
| GSM8561894 |
M82, H3K9ac, Rep2 |
| GSM8561895 |
M82, H3K9me2, Rep2 |
| GSM8561896 |
Kyp, H3K9ac, Rep2 |
| GSM8561897 |
Kyp, H3K9me2, Rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE245529 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac |
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| Relations |
| BioProject |
PRJNA1102392 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE264430_RAW.tar |
934.4 Mb |
(http)(custom) |
TAR (of BIGWIG) |
SRA Run Selector |
| Raw data are available in SRA |
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