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| Status |
Public on Aug 23, 2024 |
| Title |
LHP1 and INO80 cooperate with ethylene signaling for warm ambient temperature response by activating specific bivalent genes |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Next-generation sequencing (NGS) has been used to study the differential gene expression in Arabidopsis green seedlings under warm temperature. The goal of this study is to investigate how ethylene signaling and epigenetic modification are involved in transcriptional regulation in response to warm temperature.
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| Overall design |
Five-day-old green Arabidopsis seedling mRNA profiles of wild-type and mutants were generated by sequencing, in 2 replications, using Illumina HiSeq 2000
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| Contributor(s) |
Shao Z, Qiao H |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 23, 2024 |
| Last update date |
Aug 23, 2024 |
| Contact name |
Zhengyao Shao |
| E-mail(s) |
zyshao11@utexas.edu
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| Organization name |
University of Texas at Austin
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| Department |
MBS
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| Lab |
Hong Qiao
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| Street address |
2506 Speedway, NMS 5.324
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| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (20)
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| GSM8098686 |
seedling, ein2_21_rep2 |
| GSM8098687 |
seedling, ein3eil1_21_rep1 |
| GSM8098688 |
seedling, ein3eil1_21_rep2 |
| GSM8098689 |
seedling, lhp1_21_rep1 |
| GSM8098690 |
seedling, lhp1_21_rep2 |
| GSM8098691 |
seedling, ein2lhp1_21_rep1 |
| GSM8098692 |
seedling, ein2lhp1_21_rep2 |
| GSM8098693 |
seedling, wt_27_rep1 |
| GSM8098694 |
seedling, wt_27_rep2 |
| GSM8098695 |
seedling, ein2_27_rep1 |
| GSM8098696 |
seedling, ein2_27_rep2 |
| GSM8098697 |
seedling, ein3eil1_27_rep1 |
| GSM8098698 |
seedling, ein3eil1_27_rep2 |
| GSM8098699 |
seedling, lhp1_27_rep1 |
| GSM8098700 |
seedling, lhp1_27_rep2 |
| GSM8098701 |
seedling, ein2lhp1_27_rep1 |
| GSM8098702 |
seedling, ein2lhp1_27_rep2 |
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| Relations |
| BioProject |
PRJNA1079711 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE256453_diff_ein2_27vs21.csv.gz |
1.2 Mb |
(ftp)(http) |
CSV |
| GSE256453_diff_ein2lhp1_27vs21.csv.gz |
1.2 Mb |
(ftp)(http) |
CSV |
| GSE256453_diff_ein3eil1_27vs21.csv.gz |
1.3 Mb |
(ftp)(http) |
CSV |
| GSE256453_diff_lhp1_27vs21.csv.gz |
1.3 Mb |
(ftp)(http) |
CSV |
| GSE256453_diff_wt_27vs21.csv.gz |
1.3 Mb |
(ftp)(http) |
CSV |
| GSE256453_featureCounts_results_ein2_27vs21.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
| GSE256453_featureCounts_results_ein2lhp1_27vs21.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
| GSE256453_featureCounts_results_ein3eil1_27vs21.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
| GSE256453_featureCounts_results_lhp1_27vs21.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
| GSE256453_featureCounts_results_wt_27vs21.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
| GSE256453_readme.txt |
834 b |
(ftp)(http) |
TXT |
SRA Run Selector |
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