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Series GSE253426 Query DataSets for GSE253426
Status Public on Aug 09, 2024
Title RAS-mutant AML LSCs originate from GMPs and drive clinical resistance to BH3 mimetics [RNA-Seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Cancer driver mutations often show distinct temporal acquisition patterns, but the biological basis for this, if any, remains unknown. RAS mutations occur invariably late in the course of acute myeloid leukemia (AML), upon progression or relapsed/refractory disease1-6. Here, by employing synthetic leukemogenesis in human cells, we first show that RAS mutations are obligatory late events that need to succeed earlier cooperating mutations. We provide the mechanistic explanation for this in a requirement for mutant RAS to specifically transform committed progenitors of the myelomonocytic lineage (granulocyte-monocyte progenitors, GMPs) harboring previously acquired driver mutations, revealing that advanced leukemic clones originate from a different cell type than more ancestral clones. Furthermore, we demonstrate that RAS-mutant leukemia stem cells (LSCs) give rise to monocytic disease, as frequently observed in patients with poor responses to treatment with the BCL2 inhibitor drug Venetoclax (VEN). We show that this is because RAS-mutant LSCs, in contrast to RAS-WT LSCs, have altered BCL2 family gene expression profiles and are resistant to VEN, driving clinical resistance and relapse with monocytic features. Our findings demonstrate that a specific genetic driver by imposing a specific LSC target cell restriction shapes the non-genetic cellular hierarchy of AML and critically impacts therapeutic outcomes in patients.
 
Overall design Synthetic leukemogenesis models in human iPSC-HSPCs and primary CB HSPCs
 
Contributor(s) Papapetrou E
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Submission date Jan 17, 2024
Last update date Aug 09, 2024
Contact name BiNGS Core
E-mail(s) bings.analytics@gmail.com
Organization name Icahn School of Medicine at Mount Sinai
Street address 1470 Madison Ave
City New York
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (18)
GSM8020595 R+Ctrl1
GSM8020596 R+Ctrl2
GSM8020597 R+Ctrl3
This SubSeries is part of SuperSeries:
GSE253715 RAS-mutant AML LSCs originate from GMPs and drive clinical resistance to BH3 mimetics
Relations
BioProject PRJNA1065778

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE253426_salmon_gene_counts_cmp_gmp.csv.gz 990.3 Kb (ftp)(http) CSV
GSE253426_salmon_gene_counts_normalized_cmp_gmp.csv.gz 1.5 Mb (ftp)(http) CSV
GSE253426_salmon_gene_counts_normalized_ras_early_late.csv.gz 1.9 Mb (ftp)(http) CSV
GSE253426_salmon_gene_counts_ras_early_late.csv.gz 1.2 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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