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Series GSE252693 Query DataSets for GSE252693
Status Public on Jan 08, 2024
Title A Plant Flavonol and Genetic Suppressors Rescue a Pathogenic Mutation Associated with Kinesin in Neurons
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary KIF1A, a microtubule-based motor protein responsible for axonal transport, is linked to a group of neurological disorders known as KIF1A-associated neurological disorder (KAND). Current therapeutic options for KAND are limited. Here, we introduced the clinically relevant KIF1A(R11Q) variant into the C. elegans homolog UNC-104, resulting in uncoordinated animal behaviors. Through genetic suppressor screens, we identified intragenic mutations in UNC-104's motor domain that rescued synaptic vesicle localization and coordinated movement. We showed that two suppressor mutations partially recovered motor activity in vitro by counteracting the structural defect caused by R11Q at KIF1A's nucleotide-binding pocket. We found that supplementation with fisetin, a plant flavonol, improved KIF1A(R11Q) worms’ movement and morphology. Notably, our biochemical and single-molecule assays revealed that fisetin directly restored the ATPase activity and processive movement of human KIF1A(R11Q) without affecting wild-type KIF1A. These findings suggest fisetin as a potential intervention for enhancing KIF1A(R11Q) activity and alleviating associated defects in KAND.
 
Overall design To examine the unc-104 mRNA expression in the R9Q mutant and/or with the genetic suppressor presence, with the WT animal unc-104 mRNA levels.
 
Contributor(s) Chai Y, Ke J, Ou G
Citation(s) 38271337
Submission date Jan 07, 2024
Last update date Apr 08, 2024
Contact name Yongping Chai
Organization name Tsinghua University 清华大学
Street address Tsinghua University
City Beijing
State/province Beijing
ZIP/Postal code 100080
Country China
 
Platforms (1)
GPL18730 Illumina HiSeq 1500 (Caenorhabditis elegans)
Samples (10)
GSM8005302 WT_replicate_1
GSM8005303 WT_replicate_2
GSM8005304 R9Q_replicate_1
Relations
BioProject PRJNA1062063

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE252693_RAW.tar 1.7 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA

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