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GEO accession:
Series GSE242517
Query DataSets for GSE242517
Status
Public on Jul 19, 2024
Title
MARK2/MARK3 kinases are catalytic co-dependencies of YAP/TAZ in human cancer
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Contributor(s)
Vakoc CR
,
Klingbeil O
Citation(s)
39058094
Submission date
Sep 07, 2023
Last update date
Oct 18, 2024
Contact name
Olaf Klingbeil
E-mail(s)
klingbe@cshl.edu
Organization name
Cold Spring Harbor Laboratory
Street address
1 Bungtown Road
City
Cold Spring Harbor
State/province
New York
ZIP/Postal code
11724
Country
USA
Platforms (2)
GPL21697
NextSeq 550 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (192)
Less...
More...
GSM7745162
CUT&RUN MDA-MB231 H3K27ac d5 sgCtrl
GSM7745163
CUT&RUN MDA-MB231 H3K27ac d5 sgYAP/TAZ
GSM7745164
CUT&RUN MDA-MB231 H3K27ac d7 sgCtrl
GSM7745165
CUT&RUN MDA-MB231 H3K27ac d7 sgMARK2+3, rep1
GSM7745166
CUT&RUN MDA-MB231 H3K27ac d7 sgMARK2+3, rep2
GSM7745167
CUT&RUN MDA-MB231 H3K27ac d7 sgMARK2+3, rep3
GSM7745168
CUT&RUN MDA-MB231 IgG d5 sgCtrl
GSM7745169
CUT&RUN MDA-MB231 IgG d5 sgYAP/TAZ
GSM7745170
CUT&RUN MDA-MB231 IgG d7 sgCtrl
GSM7745171
CUT&RUN MDA-MB231 IgG d7 sgMARK2+3, rep1
GSM7745172
CUT&RUN MDA-MB231 IgG d7 sgMARK2+3, rep2
GSM7745173
CUT&RUN MDA-MB231 IgG d7 sgMARK2+3, rep3
GSM7764903
RNA-seq A549_sgCtrl_rep1
GSM7764904
RNA-seq A549_sgCtrl_rep2
GSM7764905
RNA-seq A549_sgM2_3_rep1
GSM7764906
RNA-seq A549_sgM2_3_rep2
GSM7764907
RNA-seq A549_sgY1T1_rep1
GSM7764908
RNA-seq A549_sgY1T1_rep2
GSM7764909
RNA-seq ASPC1_sgCtrl_rep1
GSM7764910
RNA-seq ASPC1_sgCtrl_rep2
GSM7764911
RNA-seq ASPC1_sgM2_3_rep1
GSM7764912
RNA-seq ASPC1_sgM2_3_rep2
GSM7764913
RNA-seq ASPC1_sgY1T1_rep1
GSM7764914
RNA-seq ASPC1_sgY1T1_rep2
GSM7764915
RNA-seq H1048_sgCtrl_rep1
GSM7764916
RNA-seq H1048_sgCtrl_rep2
GSM7764917
RNA-seq H1048_sgM2_3_rep1
GSM7764918
RNA-seq H1048_sgM2_3_rep2
GSM7764919
RNA-seq H1048_sgY1T1_rep1
GSM7764920
RNA-seq H1048_sgY1T1_rep2
GSM7764921
RNA-seq H1299_sgCtrl_rep1
GSM7764922
RNA-seq H1299_sgCtrl_rep2
GSM7764923
RNA-seq H1299_sgM2_3_rep1
GSM7764924
RNA-seq H1299_sgM2_3_rep2
GSM7764925
RNA-seq H1299_sgY1T1_rep1
GSM7764926
RNA-seq H1299_sgY1T1_rep2
GSM7764927
RNA-seq H23_sgCtrl_rep1
GSM7764928
RNA-seq H23_sgCtrl_rep2
GSM7764929
RNA-seq H23_sgM2_3_rep1
GSM7764930
RNA-seq H23_sgM2_3_rep2
GSM7764931
RNA-seq H23_sgY1T1_rep1
GSM7764932
RNA-seq H23_sgY1T1_rep2
GSM7764933
RNA-seq HPAFII_sgCtrl_rep1
GSM7764934
RNA-seq HPAFII_sgCtrl_rep2
GSM7764935
RNA-seq HPAFII_sgM2_3_rep1
GSM7764936
RNA-seq HPAFII_sgM2_3_rep2
GSM7764937
RNA-seq HPAFII_sgY1T1_rep1
GSM7764938
RNA-seq HPAFII_sgY1T1_rep2
GSM7764939
RNA-seq KLM1_sgCtrl_rep1
GSM7764940
RNA-seq KLM1_sgCtrl_rep2
GSM7764941
RNA-seq KLM1_sgM2_3_rep1
GSM7764942
RNA-seq KLM1_sgM2_3_rep2
GSM7764943
RNA-seq KLM1_sgY1T1_rep1
GSM7764944
RNA-seq KLM1_sgY1T1_rep2
GSM7764945
RNA-seq KP2_sgCtrl_rep1
GSM7764946
RNA-seq KP2_sgCtrl_rep2
GSM7764947
RNA-seq KP2_sgM2_3_rep1
GSM7764948
RNA-seq KP2_sgM2_3_rep2
GSM7764949
RNA-seq KP2_sgY1T1_rep1
GSM7764950
RNA-seq KP2_sgY1T1_rep2
GSM7764951
RNA-seq MDAMB231_MKI-mut2_rep1_24h
GSM7764952
RNA-seq MDAMB231_MKI-mut2_rep2_24h
GSM7764953
RNA-seq MDAMB231_MKI-wt_rep1_24h
GSM7764954
RNA-seq MDAMB231_MKI-wt_rep2_24h
GSM7764955
RNA-seq MIAPACA2_sgCtrl_rep1
GSM7764956
RNA-seq MIAPACA2_sgCtrl_rep2
GSM7764957
RNA-seq MIAPACA2_sgM2_3_rep1
GSM7764958
RNA-seq MIAPACA2_sgM2_3_rep2
GSM7764959
RNA-seq MIAPACA2_sgY1T1_rep1
GSM7764960
RNA-seq MIAPACA2_sgY1T1_rep2
GSM7764961
RNA-seq PANC1_sgCtrl_rep1
GSM7764962
RNA-seq PANC1_sgCtrl_rep2
GSM7764963
RNA-seq PANC1_sgM2_3_rep1
GSM7764964
RNA-seq PANC1_sgM2_3_rep2
GSM7764965
RNA-seq PANC1_sgY1T1_rep1
GSM7764966
RNA-seq PANC1_sgY1T1_rep2
GSM7764967
RNA-seq PATU8902_sgCtrl_rep1
GSM7764968
RNA-seq PATU8902_sgCtrl_rep2
GSM7764969
RNA-seq PATU8902_sgM2_3_rep1
GSM7764970
RNA-seq PATU8902_sgM2_3_rep2
GSM7764971
RNA-seq PATU8902_sgY1T1_rep1
GSM7764972
RNA-seq PATU8902_sgY1T1_rep2
GSM7764973
RNA-seq PATU8988T_sgCtrl_rep1
GSM7764974
RNA-seq PATU8988T_sgCtrl_rep2
GSM7764975
RNA-seq PATU8988T_sgM2_3_rep1
GSM7764976
RNA-seq PATU8988T_sgM2_3_rep2
GSM7764977
RNA-seq PATU8988T_sgY1T1_rep1
GSM7764978
RNA-seq PATU8988T_sgY1T1_rep2
GSM7764979
RNA-seq RD_sgCtrl_rep1
GSM7764980
RNA-seq RD_sgCtrl_rep2
GSM7764981
RNA-seq RD_sgM2_3_rep1
GSM7764982
RNA-seq RD_sgM2_3_rep2
GSM7764983
RNA-seq RD_sgY1T1_rep1
GSM7764984
RNA-seq RD_sgY1T1_rep2
GSM7764985
RNA-seq RH30_sgCtrl_rep1
GSM7764986
RNA-seq RH30_sgCtrl_rep2
GSM7764987
RNA-seq RH30_sgM2_3_rep1
GSM7764988
RNA-seq RH30_sgM2_3_rep2
GSM7764989
RNA-seq RH30_sgY1T1_rep1
GSM7764990
RNA-seq RH30_sgY1T1_rep2
GSM7764991
RNA-seq SUIT2_sgCtrl_rep1
GSM7764992
RNA-seq SUIT2_sgCtrl_rep2
GSM7764993
RNA-seq SUIT2_sgM2_3_rep1
GSM7764994
RNA-seq SUIT2_sgM2_3_rep2
GSM7764995
RNA-seq SUIT2_sgY1T1_rep1
GSM7764996
RNA-seq SUIT2_sgY1T1_rep2
GSM7764997
RNA-seq T3M4_sgCtrl_rep1
GSM7764998
RNA-seq T3M4_sgCtrl_rep2
GSM7764999
RNA-seq T3M4_sgM2_3_rep1
GSM7765000
RNA-seq T3M4_sgM2_3_rep2
GSM7765001
RNA-seq T3M4_sgY1T1_rep1
GSM7765002
RNA-seq T3M4_sgY1T1_rep2
GSM7765003
RNA-seq MDAMB231_sgM2-1-M3-2_rep1_S7
GSM7765004
RNA-seq MDAMB231_sgM2-1-M3-2_rep2_S19
GSM7765005
RNA-seq MDAMB231_sgM2-1-Ctrl_rep1_S1
GSM7765006
RNA-seq MDAMB231_sgM2-1-Ctrl_rep2_S13
GSM7765007
RNA-seq MDAMB231_sgM2-2-M3-5_rep1_S8
GSM7765008
RNA-seq MDAMB231_sgM2-2-M3-5_rep2_S20
GSM7765009
RNA-seq MDAMB231_sgM2-2-Ctrl_rep1_S2
GSM7765010
RNA-seq MDAMB231_sgM2-2-Ctrl_rep2_S14
GSM7765011
RNA-seq MDAMB231_sgM2-3-M3-1_rep1_S9
GSM7765012
RNA-seq MDAMB231_sgM2-3-M3-1_rep2_S21
GSM7765013
RNA-seq MDAMB231_sgM2-3-Ctrl_rep1_S3
GSM7765014
RNA-seq MDAMB231_sgM2-3-Ctrl_rep2_S15
GSM7765015
RNA-seq MDAMB231_sgCtrl-Ctrl_rep1_S12
GSM7765016
RNA-seq MDAMB231_sgCtrl-Ctrl_rep2_S24
GSM7765017
RNA-seq MDAMB231_sgCtrl-M3-1_rep1_S4
GSM7765018
RNA-seq MDAMB231_sgCtrl-M3-1_rep2_S16
GSM7765019
RNA-seq MDAMB231_sgCtrl-M3-2_rep1_S5
GSM7765020
RNA-seq MDAMB231_sgCtrl-M3-2_rep2_S17
GSM7765021
RNA-seq MDAMB231_sgCtrl-M3-5_rep1_S6
GSM7765022
RNA-seq MDAMB231_sgCtrl-M3-5_rep2_S18
GSM7765023
RNA-seq MDAMB231_sgCtrl-T1_rep1_S2
GSM7765024
RNA-seq MDAMB231_sgCtrl-T1_rep2_S10
GSM7765025
RNA-seq MDAMB231_sgCtrl-Ctrl2_rep1_S10
GSM7765026
RNA-seq MDAMB231_sgCtrl-Ctrl2_rep1_S1
GSM7765027
RNA-seq MDAMB231_sgCtrl-Ctrl2_rep2_S22
GSM7765028
RNA-seq MDAMB231_sgCtrl-Ctrl2_rep2_S9
GSM7765029
RNA-seq MDAMB231_sgY1-Ctrl_rep1_S3
GSM7765030
RNA-seq MDAMB231_sgY1-Ctrl_rep2_S11
GSM7765031
RNA-seq MDAMB231_sgY1-T1_rep1_S4
GSM7765032
RNA-seq MDAMB231_sgY1-T1_rep2_S12
GSM7765033
RNA-seq YAPC_sgM2-1-M3-2_rep1_S7
GSM7765034
RNA-seq YAPC_sgM2-1-M3-2_rep2_S19
GSM7765035
RNA-seq YAPC_sgM2-1-Ctrl_rep1_S1
GSM7765036
RNA-seq YAPC_sgM2-1-Ctrl_rep2_S13
GSM7765037
RNA-seq YAPC_sgM2-2-M3-5_rep1_S8
GSM7765038
RNA-seq YAPC_sgM2-2-M3-5_rep2_S20
GSM7765039
RNA-seq YAPC_sgM2-2-Ctrl_rep1_S2
GSM7765040
RNA-seq YAPC_sgM2-2-Ctrl_rep2_S14
GSM7765041
RNA-seq YAPC_sgM2-3-M3-1_rep1_S9
GSM7765042
RNA-seq YAPC_sgM2-3-M3-1_rep2_S21
GSM7765043
RNA-seq YAPC_sgM2-3-Ctrl_rep1_S3
GSM7765044
RNA-seq YAPC_sgM2-3-Ctrl_rep2_S15
GSM7765045
RNA-seq YAPC_sgCtrl-Ctrl_rep1_S12
GSM7765046
RNA-seq YAPC_sgCtrl-Ctrl_rep2_S24
GSM7765047
RNA-seq YAPC_sgCtrl-M3-1_rep1_S4
GSM7765048
RNA-seq YAPC_sgCtrl-M3-1_rep2_S16
GSM7765049
RNA-seq YAPC_sgCtrl-M3-2_rep1_S5
GSM7765050
RNA-seq YAPC_sgCtrl-M3-2_rep2_S17
GSM7765051
RNA-seq YAPC_sgCtrl-M3-5_rep1_S6
GSM7765052
RNA-seq YAPC_sgCtrl-M3-5_rep2_S18
GSM7765053
RNA-seq YAPC_sgCtrl-Ctrl2_rep1_S10
GSM7765054
RNA-seq YAPC_sgCtrl-Ctrl2_rep2_S22
GSM7765055
RNA-seq YAPC_Ctrl2-T1_rep1_S7
GSM7765056
RNA-seq YAPC_Ctrl2-T1_rep2_S15
GSM7765057
RNA-seq YAPC_Ctrl-Ctrl2_rep1_S6
GSM7765058
RNA-seq YAPC_Ctrl-Ctrl2_rep2_S14
GSM7765059
RNA-seq YAPC_Y1-Ctrl1_rep1_S8
GSM7765060
RNA-seq YAPC_Y1-Ctrl1_rep2_S16
GSM7765061
RNA-seq YAPC_Y1-T1_rep1_S5
GSM7765062
RNA-seq YAPC_Y1-T1_rep2_S13
GSM7765063
RNA-seqCHL1_sgCtrl_rep1
GSM7765064
RNA-seqCHL1_sgCtrl_rep2
GSM7765065
RNA-seqCHL1_sgM2_3_rep1
GSM7765066
RNA-seqCHL1_sgM2_3_rep2
GSM7765067
RNA-seqCHL1_sgY1T1_rep1
GSM7765068
RNA-seqCHL1_sgY1T1_rep2
GSM7765069
RNA-seqM13_sgCtrl_rep1
GSM7765070
RNA-seqM13_sgCtrl_rep2
GSM7765071
RNA-seqM13_sgM2_3_rep1
GSM7765072
RNA-seqM13_sgM2_3_rep2
GSM7765073
RNA-seqM13_sgY1T1_rep1
GSM7765074
RNA-seqM13_sgY1T1_rep2
GSM8260731
RH30_empty_rep1
GSM8260732
RH30_empty_rep2
GSM8260733
RH30_YAP_5D_rep1
GSM8260734
RH30_YAP_5D_rep2
GSM8260735
RH30_YAP_5SA_rep1
GSM8260736
RH30_YAP_5SA_rep2
GSM8260737
RH30_YAP_wt_rep1
GSM8260738
RH30_YAP_wt_rep2
This SuperSeries is composed of the following SubSeries:
GSE241897
MARK2/MARK3 kinases are catalytic co-dependencies of YAP/TAZ in human cancer [CUT&RUN]
GSE242516
MARK2/MARK3 kinases are catalytic co-dependencies of YAP/TAZ in human cancer [RNA-seq]
Relations
BioProject
PRJNA1013786
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE242517_RAW.tar
906.4 Mb
(http)
(custom)
TAR (of BED, BW)
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