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Series GSE241014 Query DataSets for GSE241014
Status Public on Sep 05, 2023
Title Targeting pathogenic CD8+ tissue-resident T cells with chimeric antigen receptor therapy in murine autoimmune cholangitis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Primary biliary cholangitis (PBC) is a cholestatic autoimmune liver disease secondary to an autoreactive T cell response against intrahepatic small bile ducts. Multiple murine models have demonstrated the critical role of effector CD8+T cells in this response and our work has used IL-12p40-/-IL-2Rα-/- mice (DKO mice) to study this issue. Herein we first demonstrated that use of either a CD8a knock-out or an anti-CD8a antibody prevents/reduces biliary immunopathology. Bulk and single-cell RNA sequencing analysis identifies CD8+ tissue resident memory T cells (Trm) in the liver of DKO mice, which highly express activation and cytotoxicity associated markers and have the ability to induce apoptosis of bile duct epithelial cells. Liver CD8+Trm cells also upregulate expression of several immune checkpoint molecules and in particular we identified PD-1 as a specific liver CD8+Trm cell marker in this model. Based on these data we constructed a novel chimeric antigen receptor containing a PD-L1 extracellular domain to target PD-1-expressing CD8+Trm cells. Importantly, treatment of DKO mice with PD-1 targeting CAR-T cells selectively depleted liver CD8+Trm cells in vivo and alleviated autoimmune cholangitis.
 
Overall design To access the efficacy of anti-PD-1 CAR-T treatment, we extracted the total RNA of liver tissues of DKO mice after anti-PD-1 CAR-T or Ctrl-T infusion and their control littermates, , then we build the cDNA library and performed the bulk RNA sequencing.
 
Contributor(s) Hao-Xian Z, Shu-Han Y
Citation(s) 38580644
Submission date Aug 16, 2023
Last update date Apr 24, 2024
Contact name Hao-Xian ZHU
E-mail(s) zhuhx97@gmail.com
Organization name Guangdong Provincial People’s Hospital
Street address No. 106, Zhongshan 2nd Road
City guangzhou
State/province Guangdong
ZIP/Postal code 510000
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (17)
GSM7713834 L1
GSM7713835 L2
GSM7713836 L3
Relations
BioProject PRJNA1006041

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE241014_RAW.tar 5.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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