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| Status |
Public on May 10, 2024 |
| Title |
Analysis of gene expression in Mel Z cells grown on Matrigel in the presence of inhibitor(MMI). |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA-Seq procedure was used for analysis of expression in melanoma cells. Cells were separately lysed with Trizol reagent (Invotrogen). Total RNA was extracted from cell lysed with Trizol reagent and PureLink RNA Micro Kit (Invitrogen) according to manufacture instruction. RNA quality was checked with BioAnalyser and RNA 6000 Nano Kit (Agilent). Poly(A)+ RNA was purified with Dynabeads® mRNA Purification Kit (Ambion). Illumina library was prepared from poly(A)+RNA with NEBNextNEBNext® Ultra™II RNA Library Prep Kit for Illumina® (NEB) according to manual. Sequencing was performed on HiSeq1500 with 50 bp read length. At least 14.8 millions of reads were generated for each sample.
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| Overall design |
Analysis of gene expression in Mel Z cells grown on plastic (MP), Matrigel (MM), and on Matrigel in the presence of inhibitor(MMI).
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| Web link |
https://link.springer.com/content/pdf/10.1134/S0026893324020055.pdf
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| Contributor(s) |
Tchurikov NA, Kravatsky YV, Vartanian AA |
| Citation(s) |
39273240 |
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| Submission date |
Dec 28, 2022 |
| Last update date |
Oct 08, 2024 |
| Contact name |
Nickolai Tchurikov |
| E-mail(s) |
tchurikov@eimb.ru
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| Organization name |
Engelhardt Institute of Molecular Biology
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| Department |
Department of Epigenetic Mechanisms of Gene Expression Regulation
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| Street address |
32, Vavilova str.
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| City |
Moscow |
| ZIP/Postal code |
119991 |
| Country |
Russia |
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| Platforms (1) |
| GPL18460 |
Illumina HiSeq 1500 (Homo sapiens) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE221877 |
Analysis of gene expression in Mel Z cells grown on MM, MP, and with MMI |
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| Relations |
| BioProject |
PRJNA916610 |
