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Series GSE218154 Query DataSets for GSE218154
Status Public on May 14, 2024
Title Single cell RNA sequencing for α lymphoid progenitor
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The single-cell transcriptional analysis of bone marrow progenitors and subsequent analysis revealed that GATA3 induction in late ILC2-committed precursor depends on the G3SE lesion and that the upregulation of GATA3 in the late ILC2-precursor is required for the transition to mature ILC2.
 
Overall design Single cell RNA-sequencing was performed in α lymphoid progenitor of WT mice and G3SEKO (GATA3-related tandem Super-Enhancers Knock-Out) mice
 
Contributor(s) Iwata A, Furuya H, Toda Y
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Submission date Nov 16, 2022
Last update date May 15, 2024
Contact name Arifumi Iwata
Organization name Chiba University
Department Department of Allergy and Clinical Immunology
Street address 1-8-1 Inohana, Chuou-ku
City Chiba-shi
State/province Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM6735564 scRNA-seq_αLP_mRNA
GSM6735565 scRNA-seq_αLP_hashtag
GSM8150406 scRNA-seq_αLP_mRNA_v2 paired
This SubSeries is part of SuperSeries:
GSE218155 ILC2 development requires GATA3-related super-enhancers after lineage commitment
Relations
BioProject PRJNA902422

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218154_BDRhapsody_CellLabelSequences_Sept2017.xlsx 12.5 Kb (ftp)(http) XLSX
GSE218154_RAW.tar 40.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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