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GEO accession:
Series GSE218115
Query DataSets for GSE218115
Status
Public on Oct 20, 2023
Title
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38040699
Submission date
Nov 16, 2022
Last update date
Dec 14, 2023
Contact name
Ning Qing Liu
E-mail(s)
n.liu@erasmusmc.nl
Organization name
Erasmus University Medical Center Rotterdam
Department
Hematology
Street address
Wytemaweg 80
City
Rotterdam
ZIP/Postal code
3015 CN
Country
Netherlands
Platforms (4)
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GPL21290
Illumina HiSeq 3000 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (67)
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GSM6734756
4C.01_MRTK.60_MYC.P_CTRL_rep1
GSM6734757
4C.03_MRTK.60_MYC.P_SMARCB1_rep1
GSM6734758
4C.05_MRTK.78_MYC.P_CTRL_rep1
GSM6734759
4C.06_MRTK.78_MYC.P_CTRL_rep2
GSM6734760
4C.07_MRTK.78_MYC.P_SMARCB1_rep1
GSM6734761
4C.08_MRTK.78_MYC.P_SMARCB1_rep2
GSM6734762
ATAC.01_MRTK.103_CTRL_rep1
GSM6734763
ATAC.02_MRTK.103_CTRL_rep2
GSM6734764
ATAC.03_MRTK.103_CTRL_rep3
GSM6734765
ATAC.04_MRTK.103_SMARCB1_rep1
GSM6734766
ATAC.05_MRTK.103_SMARCB1_rep2
GSM6734767
ATAC.06_MRTK.103_SMARCB1_rep3
GSM6734768
ATAC.07_MRTK.60_CTRL_rep1
GSM6734769
ATAC.08_MRTK.60_CTRL_rep2
GSM6734770
ATAC.09_MRTK.60_CTRL_rep3
GSM6734771
ATAC.10_MRTK.60_SMARCB1_rep1
GSM6734772
ATAC.11_MRTK.60_SMARCB1_rep2
GSM6734773
ATAC.12_MRTK.60_SMARCB1_rep3
GSM6734774
ATAC.13_MRTK.78_CTRL_rep1
GSM6734775
ATAC.14_MRTK.78_CTRL_rep2
GSM6734776
ATAC.15_MRTK.78_CTRL_rep3
GSM6734777
ATAC.16_MRTK.78_SMARCB1_rep1
GSM6734778
ATAC.17_MRTK.78_SMARCB1_rep2
GSM6734779
ATAC.18_MRTK.78_SMARCB1_rep3
GSM6734780
ChIP.01_MRTK.103_antiCTCF_CTRL
GSM6734781
ChIP.02_MRTK.103_antiCTCF_SMARCB1
GSM6734782
ChIP.03_MRTK.103_antiRAD21_CTRL
GSM6734783
ChIP.04_MRTK.103_antiRAD21_SMARCB1
GSM6734784
ChIP.05_MRTK.103_antiH3K27ac_CTRL
GSM6734785
ChIP.06_MRTK.103_antiH3K27ac_SMARCB1
GSM6734786
HiC.01_MRTK.103_CTRL
GSM6734787
HiC.02_MRTK.103_SMARCB1
GSM6734788
RNA.01_MRTK.103_CTRL_rep1
GSM6734789
RNA.02_MRTK.103_CTRL_rep2
GSM6734790
RNA.03_MRTK.103_SMARCB1_rep1
GSM6734791
RNA.04_MRTK.103_SMARCB1_rep2
GSM6734792
RNA.05_MRTK.60_CTRL_rep1
GSM6734793
RNA.06_MRTK.60_CTRL_rep2
GSM6734794
RNA.07_MRTK.60_SMARCB1_rep1
GSM6734795
RNA.08_MRTK.60_SMARCB1_rep2
GSM6734796
RNA.09_MRTK.78_CTRL_rep1
GSM6734797
RNA.10_MRTK.78_CTRL_rep2
GSM6734798
RNA.11_MRTK.78_SMARCB1_rep1
GSM6734799
RNA.12_MRTK.78_SMARCB1_rep2
GSM6734800
RNA.13_MRTK.103_DMSO_rep1
GSM6734801
RNA.14_MRTK.103_DMSO_rep2
GSM6734802
RNA.15_MRTK.103_iBRD9_rep1
GSM6734803
RNA.16_MRTK.103_iBRD9_rep2
GSM6737654
4C.02_MRTK.60_MYC.P_CTRL_rep2
GSM6737655
4C.04_MRTK.60_MYC.P_SMARCB1_rep2
GSM7849907
ChIP.07_MRTK.103_antiSMARCB1_CTRL
GSM7849908
ChIP.08_MRTK.103_antiSMARCB1_SMARCB1
GSM7849909
CUTRUN.01_MRTK.103_noAb_CTRL
GSM7849910
CUTRUN.02_MRTK.103_noAb_SMARCB1
GSM7849911
CUTRUN.03_MRTK.103_antiSS18_CTRL
GSM7849912
CUTRUN.04_MRTK.103_antiSS18_SMARCB1
GSM7849913
CUTRUN.05_MRTK.103_antiBRD9_CTRL
GSM7849914
CUTRUN.06_MRTK.103_antiBRD9_SMARCB1
GSM7849915
CUTRUN.07_MRTK.103_noAb_DMSO
GSM7849916
CUTRUN.08_MRTK.103_noAb_iBRD9
GSM7849917
CUTRUN.09_MRTK.103_antiSS18_DMSO
GSM7849918
CUTRUN.10_MRTK.103_antiSS18_iBRD9
GSM7849919
CUTRUN.11_MRTK.103_antiBRD9_DMSO
GSM7849920
CUTRUN.12_MRTK.103_antiBRD9_iBRD9
GSM7849921
CUTRUN.13_MRTK.103_noAb
GSM7849922
CUTRUN.14_MRTK.103_antiSS18
GSM7849923
CUTRUN.15_MRTK.103_antiBRD9
This SuperSeries is composed of the following SubSeries:
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GSE218110
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [4C-seq]
GSE218111
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [ATAC-seq]
GSE218112
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [ChIP-seq]
GSE218113
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [Hi-C]
GSE218114
SMARCB1 loss creates patient-specific MYC topologies that drive malignant rhabdoid tumor growth [RNA-seq]
Relations
BioProject
PRJNA902395
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE218115_RAW.tar
6.8 Gb
(http)
(custom)
TAR (of BEDGRAPH, BW, HIC)
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