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Series GSE218065 Query DataSets for GSE218065
Status Public on Sep 15, 2023
Title Single cell RNA-seq for human and bovine PBMCs stimulated with M. tuberculosis
Organisms Homo sapiens; Bos taurus
Experiment type Expression profiling by high throughput sequencing
Summary We propose a custom pipeline for combining data from experiments on multispecies studies tested on data from human and bovine peripheral blood mononuclear cellssamples, stimulated with Mycobacterium tuberculosis.
Overall design PBMC samples from cattle and human were isolated using pancoll (Pan-Biotech) gradient density centrifugation following the manufacturer’s protocol and analysed using scRNAseq.
Contributor(s) Papiez A
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Submission date Nov 15, 2022
Last update date Sep 15, 2023
Contact name Anna Papiez
Organization name Silesian University of Technology
Department Department of Data Science and Engineering
Street address Akademicka 16
City Gliwice
ZIP/Postal code 44-100
Country Poland
Platforms (2)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL22316 Illumina HiSeq 1500 (Bos taurus)
Samples (4)
GSM6734046 human, control, scRNAseq
GSM6734047 human, Mtb, scRNAseq
GSM6734048 bovine, control, scRNAseq
BioProject PRJNA902014

Download family Format
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Supplementary file Size Download File type/resource
GSE218065_RAW.tar 64.2 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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