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Series GSE216851 Query DataSets for GSE216851
Status Public on Jan 11, 2024
Title SARS-CoV-2-induced disruption of a vascular bed in a microphysiological system caused by type-I interferon from bronchial organoids
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Blood vessels show various COVID-19-related conditions including thrombosis and cytokine propagation. Existing in vitro blood vessel models cannot represent the consequent changes in the vascular structure or determine the initial infection site, making it difficult to evaluate how epithelial and endothelial tissues are damaged. Here, we developed a microphysiological system (MPS) that co-culture the bronchial organoids and the vascular bed to analyze infection site and interactions. In this system, virus-infected organoids caused damage in vascular structure. However, vasculature was not damaged or infected when the virus was directly introduced to vascular bed. The knockout of interferon-related genes and inhibition of the JAK/STAT pathway reduced the vascular damage, indicating the protective effect of interferon response suppression. The results demonstrate selective infection of bronchial epithelial cells and vascular damage by cytokines and also indicate the applicability of MPS to investigate how the infection influences vascular structure and functions.
 
Overall design RNA-seq in the uninfected and infected BO : Total RNA was collected, and then RNA-seq was performed.
 
Contributor(s) Takayama K
Citation(s) 38252025
Submission date Oct 29, 2022
Last update date Apr 11, 2024
Contact name Kazuo Takayama
E-mail(s) kazuo.takayama@cira.kyoto-u.ac.jp
Phone +81-75-366-7362
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address Shogoin Kawaharacho 53, Sakyo-ku
City Kyoto
State/province Kyoto
ZIP/Postal code 6068507
Country Japan
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (6)
GSM6696774 BO_CNT-1
GSM6696775 BO_CNT-2
GSM6696776 BO_CNT-3
Relations
BioProject PRJNA895695

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216851_TPM_for_GEO_upload.txt.gz 1.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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