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Series GSE216687 Query DataSets for GSE216687
Status Public on Jul 14, 2023
Title The oncogenic circular RNA circ_63706 is a potential therapeutic target in sonic hedgehog-subtype childhood medulloblastomas.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To gain further insights into the functional significance of circ_63706, gene expression was measured by RNA-seq in DAOY cells treated with either si-NC (non-targeting control) or si-circ_63706.
 
Overall design Gene expression comparison of si-circ_63706 and si-NC (control) using RNA-seq.
 
Contributor(s) Perera RJ, Pokhrel R, Katsushima K
Citation(s) 36899402
Submission date Oct 27, 2022
Last update date Jul 14, 2023
Contact name Ranjan J. Perera
E-mail(s) jperera2@jh.edu
Organization name Johns Hopkins University School of Medicine
Department Department of Oncology,
Street address 600 Fifth Street S.
City St. Petersburg
State/province FL
ZIP/Postal code 33701
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (5)
GSM6685991 DAOY si-NC rep1
GSM6685992 DAOY si-NC rep2
GSM6685993 DAOY si-circ_63706 rep1
Relations
BioProject PRJNA894971

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216687_TPM.txt.gz 1.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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