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GEO accession:
Series GSE207116
Query DataSets for GSE207116
Status
Public on Jan 30, 2023
Title
Response of cohesin STAG1 and STAG2 to reduction of NIPBL levels
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36898992
Submission date
Jun 28, 2022
Last update date
May 08, 2023
Contact name
Daniel Gimenez
E-mail(s)
dgimenezl@cnio.es
Organization name
CNIO
Street address
Calle de Melchor Fernández Almagro, 3
City
Madrid
ZIP/Postal code
28029
Country
Spain
Platforms (1)
GPL21697
NextSeq 550 (Homo sapiens)
Samples (36)
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More...
GSM6278651
MCF10A_Control_R1_RNA-seq
GSM6278652
MCF10A_Control_R2_RNA-seq
GSM6278653
MCF10A_Control_R3_RNA-seq
GSM6278654
MCF10A_NIPBL KD_R1_RNA-seq
GSM6278655
MCF10A_NIPBL KD_R2_RNA-seq
GSM6278656
MCF10A_NIPBL KD_R3_RNA-seq
GSM6278699
MCF10A_Input_Control1_ChIP-seq
GSM6278700
MCF10A_Input _NIPBL KD_ChIP-seq
GSM6278701
MCF10A_SMC1_Control1_ChIP-seq
GSM6278702
MCF10A_SMC1_NIPBL KD_ChIP-seq
GSM6278703
MCF10A_STAG1_Control1_ChIP-seq
GSM6278704
MCF10A_STAG1_NIPBL KD_ChIP-seq
GSM6278705
MCF10A_STAG2_Control1_ChIP-seq
GSM6278706
MCF10A_STAG2_NIPBL KD_ChIP-seq
GSM6278707
MCF10A_Input_Control2_ChIP-seq
GSM6278708
MCF10A_Input_CTCF KD_ChIP-seq
GSM6278709
MCF10A_Input_CTCF-NIPBL KD_ChIP-seq
GSM6278710
MCF10A_STAG1_Control2_ChIP-seq
GSM6278711
MCF10A_STAG1_CTCF KD_ChIP-seq
GSM6278712
MCF10A_STAG1_CTCF-NIPBL KD
GSM6278713
MCF10A_STAG2_Control2_ChIP-seq
GSM6278714
MCF10A_STAG2_CTCF KD_ChIP-seq
GSM6278715
MCF10A_STAG2_CTCF-NIPBL KD_ChIP-seq
GSM6278716
MCF10A_Control_R1_HiC
GSM6278717
MCF10A_Control_R2_HiC
GSM6278718
MCF10A_Control_R3_HiC
GSM6278719
MCF10A_NIPBL KD_R1_HiC
GSM6278720
MCF10A_NIPBL KD_R2_HiC
GSM6278721
MCF10A_NIPBL KD_R3_HiC
GSM6278722
MCF10A_NIPBL KD_R4_HiC
GSM6675532
MCF10A_Input_Control3_ChIP-seq
GSM6675533
MCF10A_Input_CTCF-KD2_ChIP-seq
GSM6675534
MCF10A_STAG1_Control3_ChIP-seq
GSM6675535
MCF10A_STAG1_CTCF-KD2_ChIP-seq
GSM6675536
MCF10A_CTCF_Control3_ChIP-seq
GSM6675537
MCF10A_CTCF_CTCF-KD2_ChIP-seq
This SuperSeries is composed of the following SubSeries:
GSE207110
Response of cohesin STAG1 and STAG2 to reduction of NIPBL levels [RNA-Seq]
GSE207113
Response of cohesin STAG1 and STAG2 to reduction of NIPBL levels [ChIP-Seq]
GSE207115
Response of cohesin STAG1 and STAG2 to reduction of NIPBL levels [Hi-C]
Relations
BioProject
PRJNA853750
Download family
Format
SOFT formatted family file(s)
SOFT
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MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE207116_RAW.tar
2.4 Gb
(http)
(custom)
TAR (of BW, TXT)
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