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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 30, 2022 |
| Title |
Aberrant gene activation in synovial sarcoma relies on SSX specificity and increased PRC1.1 stability |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://www.nature.com/articles/s41594-023-01096-3
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| Citation(s) |
37735617 |
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| Submission date |
Jun 12, 2022 |
| Last update date |
Sep 27, 2023 |
| Contact name |
Nezha Suzanne Benabdallah |
| E-mail(s) |
nsbenabdallah@gmail.com
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| Organization name |
German Cancer Research Center, DKFZ
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| Department |
Functional and Structural Genomics
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| Lab |
Soft-Tissue Sarcoma
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| Street address |
Im Neuenheimer Feld 581 (TP4)
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| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
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| Platforms (2) |
| GPL21697 |
NextSeq 550 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (50)
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| GSM6236000 |
HSSY_SSX_HA |
| GSM6236001 |
HSSY_SSXDeltaRD_input |
| GSM6236002 |
HSSY_SSXDeltaRD_HA |
| GSM6236003 |
HSSY, IgG |
| GSM6236005 |
HSSY, Control, H2Aub1 |
| GSM6236006 |
HSSY, Control, HA (SS18-SSX1) |
| GSM6236007 |
HSSY, PCGF1 knockout, H2Aub1 |
| GSM6236008 |
HSSY, PCGF1 knockout, HA (SS18-SSX1) |
| GSM6236009 |
SYOI, IgG |
| GSM6236010 |
SYOI, Control, H2Aub1 |
| GSM6236011 |
SYOI, Control, SS18-SSX2 |
| GSM6236012 |
SYOI, PCGF1 knockout, H2Aub1 |
| GSM6236013 |
SYOI, PCGF1 knockout, SS18-SSX2 |
| GSM7426492 |
HSSY, IgG, NoDox |
| GSM7426493 |
HSSY, IgG, NoDox, SSX-C, HA |
| GSM7426494 |
HSSY, IgG, Dox, SS18-SSX knockdown, SSX-C, HA |
| GSM7426495 |
KHOS, EV, IgG |
| GSM7426496 |
KHOS, EV, HA |
| GSM7426497 |
KHOS, EV, SS18, HA |
| GSM7426498 |
KHOS, EV, SS18-SSX1, HA |
| GSM7426499 |
KHOS, EV, SSX-C, HA |
| GSM7426500 |
HSSY, EV, input, R1 |
| GSM7426501 |
HSSY, EV, H2Aub, R1 |
| GSM7426502 |
HSSY, EV, input, R2 |
| GSM7426503 |
HSSY, EV, H2Aub, R2 |
| GSM7426504 |
HSSY, EV, input, R3 |
| GSM7426505 |
HSSY, EV, H2Aub, R3 |
| GSM7426506 |
HSSY, sgPCGF1, input, R1 |
| GSM7426507 |
HSSY, sgPCGF1, H2Aub, R1 |
| GSM7426508 |
HSSY, sgPCGF1, input, R2 |
| GSM7426509 |
HSSY, sgPCGF1, H2Aub, R2 |
| GSM7426510 |
HSSY, sgPCGF1, input, R3 |
| GSM7426511 |
HSSY, sgPCGF1, H2Aub, R3 |
| GSM7426512 |
hMSC, empty vector, R1 |
| GSM7426513 |
hMSC, empty vector, R2 |
| GSM7426514 |
hMSC, HA-eGFP-SSX-C, R1 |
| GSM7426515 |
hMSC, HA-eGFP-SSX-C, R2 |
| GSM7426516 |
hMSC, HA-SS18-NEDD4, R1 |
| GSM7426517 |
hMSC, HA-SS18-NEDD4, R2 |
| GSM7426518 |
hMSC, HA-EWSR1-FLI1, R1 |
| GSM7426519 |
hMSC, HA-EWSR1-FLI1, R2 |
| GSM7426520 |
hMSC, HA-SS18-SSX1, R1 |
| GSM7426521 |
hMSC, HA-SS18-SSX1, R2 |
| GSM7426522 |
hMSC, HA-EWSR1-SSX1, R1 |
| GSM7426523 |
hMSC, HA-EWSR1-SSX1, R2 |
| GSM7426524 |
hMSC, HA-MN1-SSX1, R1 |
| GSM7426525 |
hMSC, HA-MN1-SSX1, R2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE205953 |
An autoregulatory feedback loop converging on H2AK119ub1 drives synovial sarcoma [ChIP-seq] |
| GSE205954 |
An autoregulatory feedback loop converging on H2AK119ub1 drives synovial sarcoma [CUT&RUN] |
| GSE233375 |
Aberrant gene activation in synovial sarcoma relies on SSX specificity and increased PRC1.1 stability |
| GSE233376 |
Aberrant gene activation in synovial sarcoma relies on SSX specificity and increased PRC1.1 stability |
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| Relations |
| BioProject |
PRJNA848404 |
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