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Series GSE205108 Query DataSets for GSE205108
Status Public on Sep 28, 2022
Title Tissue fluidification promotes a cGAS/STING-mediated cytosolic DNA response in invasive breast cancer [RNA-seq of Organoids]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The process in which locally confined epithelial malignancies progressively evolve into invasive cancers is often promoted by unjamming, a phase transition from a solid-like to a liquid-like state that occurs in various tissues. Whether this tissue-level mechanical transition impact phenotypes during carcinoma progression remains unclear. We show, here that the large fluctuations in cell density that accompany unjamming result in repeated mechanical deformations of cells and nuclei. Cells react to these protracted mechanical stresses by mounting a mechano-protective response that includes enlarged nuclear size and rigidity, altered heterochromatin distribution, and the remodeling of the perinuclear actin architecture into actin rings. The chronic strains and stresses associated with unjamming together with the reduction of Lamin B1 levels eventually result in DNA damage and nuclear envelope ruptures, with the release of cytosolic DNA that activates a cGAS/STING-dependent cytosolic DNA response gene program. This mechanically-driven transcriptional rewiring ultimately results in a change in cell state, with the emergence of malignant traits, including epithelial-to-mesenchymal plasticity phenotypes and chemo-resistance in invasive breast carcinoma.
 
Overall design RNA-seq, 2 conditions (rotating and non-rotating), 5 organoids (3 rotating and 2 non-rotating) derived from 5 patients
 
Contributor(s) Frittoli E, Palamidessi A, Iannelli F, Zanardi F, Della Chiara G, Pagani M, Scita G
Citation(s) 36581770
Submission date May 30, 2022
Last update date Aug 02, 2023
Contact name Giorgio Scita
E-mail(s) giorgio.scita@ifom.eu
Organization name IFOM, The AIRC Institute of Molecular Oncology
Street address via Adamello, 16
City Milan
State/province Mi
ZIP/Postal code 20139
Country Italy
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (5)
GSM6205305 BR25
GSM6205306 BR30
GSM6205307 BR39
Relations
BioProject PRJNA843779

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE205108_gene_counts.csv.gz 287.2 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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