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Series GSE198607 Query DataSets for GSE198607
Status Public on May 14, 2022
Title Molecular subtyping of “double negative” MIBC
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Identifying patients that benefit from cisplatin-based adjuvant chemotherapy is a major issue in the management of muscle-invasive bladder cancer (MIBC). The purpose of this study is to correlate “luminal” and “basal” type protein expression with histological subtypes, to investigate the prognostic impact on survival after adjuvant chemotherapy and to define molecular subtypes of “double negative” patients (i.e. without expression of CK5/6 or GATA3).
 
Overall design 10 IHC-double negative cases were analyzed with the HTG transcriptome panel with 19398 mRNA targets. Molecular consensus classification was determined according to Kamoun et al. (Euro Urol, 2019)
 
Contributor(s) Döring C, Koll FJ
Citation(s) 35783619
Submission date Mar 14, 2022
Last update date Jul 07, 2022
Contact name Florestan Johannes Koll
E-mail(s) florestanjohannes.koll@kgu.de
Organization name University Hospital Frankfurt, Goethe University
Department Department of Urology
Street address Theodor-Stern-Kai 7
City Frankfurt
ZIP/Postal code 60590
Country Germany
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (10)
GSM5953451 260-A039113
GSM5953452 260-A039102
GSM5953453 260-A039082
Relations
BioProject PRJNA816119

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Supplementary file Size Download File type/resource
GSE198607_Processed_Data_counts_DN.xlsx 1.3 Mb (ftp)(http) XLSX
GSE198607_Processed_HTG_median_all_log2_HUGO_DN.tsv.gz 354.7 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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