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| Status |
Public on Feb 04, 2010 |
| Title |
Microarray data from aerial tissue of submergence tolerant M202(Sub1) and intolerant M202 |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
|
| Summary |
An ERF transcription factor, Submergence-1A (Sub1A), dramatically enhances the tolerance to prolonged submergence in rice. For instance, rice accessions which lack Sub1A (e.g. M202) die within 7-10 d of complete submergence. By contrast, genotypes which posses Sub1A (e.g. M202(Sub1)) can endure submergence stress for 14 d. In this study, the two near isogenic lines with and without Sub1A were subjected to microarray analysis using Affymetrix Gene Chip technology. This analysis provided beneficial information to elucidate general response to submergence stress and to estimate Sub1A-dependent defense response to the stress at mRNA accumulation level.
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| Overall design |
Aerial tissue of 14-d-old plants which were submerged for 24 h were subjected to RNA extraction and hybridization on Affymetrix microarrays. Non-submerged plants were used as control. Two independent biological replicates were analyzed for each treatment/genotype.
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| Contributor(s) |
Fukao T, Bailey-Serres J |
| Citation(s) |
20097791 |
| |
| Submission date |
Nov 06, 2009 |
| Last update date |
Dec 27, 2017 |
| Contact name |
Takeshi Fukao |
| E-mail(s) |
fukao@ucr.edu
|
| Organization name |
University of California, Riverside
|
| Street address |
Department of Botany and Plant Sciences
|
| City |
Riverside |
| State/province |
CA |
| ZIP/Postal code |
92521 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
|
| Samples (8)
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| GSM468796 |
M202 at day 1, biological rep2 |
| GSM468797 |
M202(Sub1) at day 0, biological rep1 |
| GSM468798 |
M202(Sub1) at day 0, biological rep2 |
| GSM468799 |
M202(Sub1) at day 1, biological rep1 |
| GSM468800 |
M202(Sub1) at day 1, biological rep2 |
|
| Relations |
| BioProject |
PRJNA121039 |
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