|
| Status |
Public on Jan 25, 2023 |
| Title |
Histone variant H3.3 facilitates open chromatin at promoters [ATAC-seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We analyze the contribution of H3.3 to chromatin accessibility, post-translational modification states, and transcription in mouse embryonic stem cells (mESC).
|
| |
|
| Overall design |
ATAC-seq analysis in mouse embryonic stem cell lines and embryoid bodies (Control, H33KO).
|
| |
|
| Contributor(s) |
Martire S, Banaszynski LA |
| Citation(s) |
36782260 |
| |
| Submission date |
Oct 27, 2021 |
| Last update date |
Apr 26, 2023 |
| Contact name |
Laura Banaszynski |
| E-mail(s) |
Laura.banaszynski@utsouthwestern.edu
|
| Organization name |
UT Southwestern Medical Center
|
| Department |
Green Center for Reproductive Biology Sciences
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390-8511 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (6)
|
|
| This SubSeries is part of SuperSeries: |
| GSE186687 |
Histone variant H3.3 facilitates open chromatin at promoters. |
|
| Relations |
| BioProject |
PRJNA775069 |
| SRA |
SRP343431 |
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