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Series GSE171783 Query DataSets for GSE171783
Status Public on May 24, 2021
Title Sustained viremia suppression by SHIVsf162p3cn-recalled effector-memory CD8+ T cells after PD1-based vaccination
Organism Macaca mulatta
Experiment type Expression profiling by high throughput sequencing
Summary HIV-1 functional cure requires sustained viral suppression without antiretroviral therapy. While effector-memory CD8+ T lymphocytes are essential for viremia control, few vaccines elicit such cellular immunity that could be potently recalled upon viral infection. Here, we investigated a program death-1 (PD1)-based vaccine by fusion of simian immunodeficiency virus capsid antigen to soluble PD1. Homologous vaccinations suppressed setpoint viremia to undetectable levels in all vaccinated macaques following high-dose intravenous challenge by the pathogenic SHIVSF162P3CN. Poly-functional effector-memory CD8+ T cells were not only induced after vaccination, but were also recalled upon viral challenge for viremia control as determined by CD8 depletion. Vaccine-induced effector memory CD8+ subsets displayed high cytotoxicity-related genes by single-cell analysis. Vaccinees with sustained viremia suppression for over two years responded to boost vaccination without viral rebound. These results demonstrated that PD1-based vaccine-induced effector-memory CD8+ T cells were recalled by AIDS virus infection, providing a potential immunotherapy for functional cure.
 
Overall design Single cell RNA sequencing analysis was done by using FACS purified CD8+ T cells isolated from 3 macaques (B01, B02, and B03) in Group B before immunisation, 4 weeks post, and 12 weeks post immunisation.
 
Contributor(s) Yue M, Wong Y, Yim L, Song Y, Chen Z
Citation(s) 34125864
Submission date Apr 09, 2021
Last update date Jul 08, 2021
Contact name Ming Yue
E-mail(s) nervym7@connect.hku.hk
Organization name The University of Hong Kong
Street address 21 Sassoon Road, Pokfulam
City Hong Kong
ZIP/Postal code 999077
Country China
 
Platforms (1)
GPL27943 Illumina NovaSeq 6000 (Macaca mulatta)
Samples (9)
GSM5234126 B01_W0
GSM5234127 B01_W4
GSM5234128 B01_W12
Relations
BioProject PRJNA720908
SRA SRP314218

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Supplementary file Size Download File type/resource
GSE171783_RAW.tar 160.6 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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