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Series GSE15915 Query DataSets for GSE15915
Status Public on May 03, 2009
Title Transcription profiling of Brassica lines
Platform organism Brassica
Sample organisms Brassica napus; Brassica rapa; Brassica oleracea
Experiment type Expression profiling by array
Summary Transcription profiling of Brassica rapa, Brassica oleracea and Brassica napus I and II

The nuclear genomes of the resynthesised B. napus lines should be identical but, as one (B. napus I) involved a cross of B. oleracea onto B. rapa, and the other (B. napus II) involved a cross of B rapa onto B. oleracea, they differ in cytoplasm, and hence contain different chloroplast and mitochondrial genomes.
 
Overall design Four-condition experiment, comparison of transcription profiles of the genomes. Four biological replicates were used, independently grown and harvested. One replicate per array.
 
Contributor(s) Trick M, Cheung F, Drou N, Fraser F, Lebenhofer EK, Hurban P, Magusin A, Town CD, Bancroft I
Citation(s) 19426481
Submission date Apr 30, 2009
Last update date May 08, 2015
Contact name Andreas Magusin
E-mail(s) andreas.magusin@jic.ac.uk
Organization name John Innes Centre
Department Crop Genetics
Street address Norwich Research Park
City Norwich
ZIP/Postal code NR47UH
Country United Kingdom
 
Platforms (1)
GPL8513 Agilent-018073 Custom Brassica 60-mer two-color microarray
Samples (16)
GSM399515 Brassica napus 2 replicate 4
GSM399516 Brassica oleracea replicate 1
GSM399517 Brassica napus 4 replicate 3
Relations
BioProject PRJNA116915

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15915_RAW.tar 277.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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