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GEO accession:
Series GSE158406
Query DataSets for GSE158406
Status
Public on Nov 24, 2020
Title
De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG island
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33514701
Submission date
Sep 23, 2020
Last update date
Feb 01, 2021
Contact name
Duncan Sproul
Organization name
University of Edinburgh
Department
MRC Human Genetics Unit
Street address
Crewe Road South
City
Edinburgh
State/province
Mid Lothian
ZIP/Postal code
EH4 2XU
Country
United Kingdom
Platforms (2)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
Samples (50)
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GSM4088823
HCT116_experiment_1
GSM4088824
DKO_experiment_1
GSM4088825
DKO_dnmt3b_experiment_1
GSM4088826
DKO_dnmt3b_catDead_experiment_1
GSM4088827
HCT116_experiment_2
GSM4088828
DKO_experiment_2
GSM4088829
DKO_dnmt3b_experiment_2
GSM4088830
DKO_dnmt3b_catDead_experiment_2
GSM4088831
DKO_gfp_experiment_2
GSM4088832
HCT116_aza_treated_day_3
GSM4088833
HCT116_aza_treated_day_6
GSM4088834
HCT116_aza_treated_day_13
GSM4088835
HCT116_aza_treated_day_16
GSM4088836
HCT116_aza_treated_day_22
GSM4088837
HCT116_aza_treated_day_28
GSM4088838
HCT116_aza_treated_day_40
GSM4088839
HCT116_untreated_day_40
GSM4088840
HCT116_DNMT3B_KO
GSM4088841
HCT116_DNMT3B_KO_aza_treated_day_3
GSM4088842
HCT116_DNMT3B_KO_aza_treated_day_6
GSM4088843
HCT116_DNMT3B_KO_aza_treated_day_13
GSM4088844
HCT116_DNMT3B_KO_aza_treated_day_16
GSM4088845
HCT116_DNMT3B_KO_aza_treated_day_22
GSM4088846
HCT116_DNMT3B_KO_aza_treated_day_28
GSM4088847
HCT116_DNMT3B_KO_aza_treated_day_40
GSM4088848
HCT116_DNMT3B_KO_untreated_day_40
GSM4088849
HCT116_DNMT1_KO
GSM4088850
HCT116_DNMT1_KO_aza_treated_day_3
GSM4088851
HCT116_DNMT1_KO_aza_treated_day_6
GSM4088852
HCT116_DNMT1_KO_aza_treated_day_13
GSM4088853
HCT116_DNMT1_KO_aza_treated_day_16
GSM4088854
HCT116_DNMT1_KO_aza_treated_day_22
GSM4088855
HCT116_DNMT1_KO_aza_treated_day_40
GSM4088856
HCT116_DNMT1_KO_untreated_day_40
GSM4799137
hct116_k36me3_input_rep_1
GSM4799138
hct116_dko_k36me3_input_rep_1
GSM4799139
hct116_k36me3_chip_rep_1
GSM4799140
hct116_dko_k36me3_chip_rep_1
GSM4799141
hct116_k36me3_input_rep_2
GSM4799142
hct116_dko_k36me3_input_rep_2
GSM4799143
hct116_k36me3_chip_rep_2
GSM4799144
hct116_dko_k36me3_chip_rep_2
GSM4799145
hct116_t7_input_rep_1
GSM4799146
hct116_t7_dnmt3b_t7_input_rep_1
GSM4799147
hct116_t7_chip_rep_1
GSM4799148
hct116_t7_dnmt3b_t7_chip_rep_1
GSM4799149
hct116_t7_input_rep_2
GSM4799150
hct116_t7_dnmt3b_t7_input_rep_2
GSM4799151
hct116_t7_chip_rep_2
GSM4799152
hct116_t7_dnmt3b_t7_chip_rep_2
This SuperSeries is composed of the following SubSeries:
GSE137812
De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG island (RRBS)
GSE158404
De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG island (H3K36me3 ChIP-Rx_seq)
GSE158405
De novo DNA methyltransferase activity in colorectal cancer is directed towards H3K36me3 marked CpG island (T7-DNMT3B ChIP-Rx_seq)
Relations
BioProject
PRJNA665164
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE158406_RAW.tar
5.8 Gb
(http)
(custom)
TAR (of BIGWIG, COV)
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