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Series GSE155350 Query DataSets for GSE155350
Status Public on Sep 07, 2021
Title Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs
Organisms Gallus gallus; Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Summary piRNAs can derive from transposable elements (TEs), long non-coding RNAs, or the 3'UTR of mRNAs, the last being the least characterized out of the three piRNA classes. In this study, we systematically defined the regulation, biogenesis and function of the 3'UTR piRNAs that are expressed throughout mouse spermatogenesis. These piRNAs are regulated by A-MYB transcription factors, and their precursors are bifunctional mRNAs which are processed into piRNAs after pioneer rounds of translation. This dataset includes high-throughput sequencing data that have been used in this study.
 
Overall design High-throughput sequencing data including RNAseq, small RNa-seq, Ribo-seq and Degradome sequencing of mouse and rooster testis. All sequencing data were sequenced on Illumina platform.
 
Contributor(s) Li XZ, Sun YH, Zheng J
Citation(s) 34645830
Submission date Jul 29, 2020
Last update date Nov 03, 2021
Contact name Xin Li
E-mail(s) Xin_Li@urmc.rochester.edu
Phone (585) 275-6576
Organization name University of Rochester
Department Biochemistry and Biophysics
Lab Li Lab
Street address 601 Elmwood Ave
City Rochester
State/province NY
ZIP/Postal code 14623
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL16133 Illumina HiSeq 2000 (Gallus gallus)
Samples (27)
GSM4699675 Riboseq.mouse.testis.4EGI.adult.rep1
GSM4699676 Riboseq.mouse.testis.4EGIControl.adult.rep1
GSM4699677 RNAseq.mouse.testis.CBP80IP.adult
Relations
BioProject PRJNA649449
SRA SRP274105

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE155350_RAW.tar 305.0 Mb (http)(custom) TAR (of BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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