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| Status |
Public on Jan 08, 2009 |
| Title |
RMA expression data for liver samples from subjects with HCV, HCV-HCC, or normal liver |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
The role of chronic hepatitis C virus (HCV) in the pathogenesis of HCV-associated hepatocellular carcinoma (HCC) is not completely understood, particularly at the molecular level.
We studied gene expression in normal, pre-malignant (cirrhosis), and tumor (HCC) liver tissues using Affymetrix GeneChips.
Keywords: cross-sectional
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| Overall design |
Liver tissue samples were obtained from patients waiting for liver transplantation at one of the GR2HCC Centers. Additionally, normal liver and tumor samples were also obtained from the Liver Tissue Cell Distribution System. For each sample, RNA was extracted and hybridized to an Affymetrix GeneChip.
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| Contributor(s) |
Mas VR, Maluf DG, Archer KJ, Yanek K, Kong X, Kulik L, Freise CE, Olthoff KM, Ghobrial RM, McIver P, Fisher RA |
| Citation(s) |
19098997, 33336826 |
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| Submission date |
Jan 07, 2009 |
| Last update date |
Jun 21, 2022 |
| Contact name |
Kellie J. Archer |
| E-mail(s) |
archer.43@osu.edu
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| Phone |
(614) 247-6167
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| Organization name |
Ohio State University
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| Department |
Division of Biostatistics
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| Street address |
1841 Neil Ave
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| City |
Columbus |
| State/province |
OH |
| ZIP/Postal code |
43210 |
| Country |
USA |
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| Platforms (2) |
| GPL96 |
[HG-U133A] Affymetrix Human Genome U133A Array |
| GPL571 |
[HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array |
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| Samples (124)
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| GSM358106 |
HCC, biological rep 4 |
| GSM358107 |
HCC, biological rep 5 |
| GSM358108 |
HCC, biological rep 6 |
| GSM358109 |
HCC, biological rep 7 |
| GSM358110 |
HCC, biological rep 8 |
| GSM358111 |
HCC, biological rep 9 |
| GSM358112 |
HCC, biological rep 10 |
| GSM358113 |
cirrhosisHCC, match HCC rep 1 |
| GSM358114 |
HCC, biological rep 11 |
| GSM358115 |
HCC, biological rep 12 |
| GSM358116 |
cirrhosisHCC, match HCC rep 12 |
| GSM358117 |
cirrhosisHCC, match HCC rep 13 |
| GSM358118 |
HCC, biological rep 13 |
| GSM358119 |
cirrhosis, biological rep 41 |
| GSM358120 |
HCC, biological rep 14 |
| GSM358121 |
cirrhosisHCC, biological rep 3 |
| GSM358122 |
HCC, biological rep 15 |
| GSM358123 |
cirrhosis, biological rep 1 |
| GSM358124 |
HCC, biological rep 16 |
| GSM358125 |
HCC, biological rep 17 |
| GSM358126 |
cirrhosisHCC, match HCC rep 16 |
| GSM358127 |
HCC, biological rep 18 |
| GSM358128 |
cirrhosis, biological rep 2 |
| GSM358129 |
HCC, biological rep 19 |
| GSM358130 |
HCC, biological rep 20 |
| GSM358131 |
HCC, biological rep 21 |
| GSM358132 |
HCC, biological rep 22 |
| GSM358133 |
HCC, biological rep 23 |
| GSM358134 |
HCC, biological rep 24 |
| GSM358135 |
HCC, biological rep 25 |
| GSM358136 |
cirrhosis, biological rep 3 |
| GSM358137 |
HCC, biological rep 26 |
| GSM358138 |
cirrhosis, biological rep 4 |
| GSM358139 |
HCC, biological rep 27 |
| GSM358140 |
HCC, biological rep 28 |
| GSM358141 |
cirrhosis, biological rep 5 |
| GSM358142 |
cirrhosis, biological rep 6 |
| GSM358143 |
HCC, biological rep 29 |
| GSM358144 |
HCC, biological rep 30 |
| GSM358145 |
cirrhosis, biological rep 7 |
| GSM358146 |
HCC, biological rep 31 |
| GSM358147 |
cirrhosis, biological rep 8 |
| GSM358148 |
cirrhosis, biological rep 9 |
| GSM358149 |
cirrhosis, biological rep 10 |
| GSM358151 |
HCC, biological rep 32 |
| GSM358152 |
HCC, biological rep 33 |
| GSM358153 |
cirrhosis, biological rep 11 |
| GSM358154 |
cirrhosis, biological rep 12 |
| GSM358155 |
HCC, biological rep 34 |
| GSM358156 |
HCC, biological rep 35 |
| GSM358157 |
cirrhosisHCC, match HCC rep 36 |
| GSM358158 |
HCC, biological rep 36 |
| GSM358159 |
cirrhosisHCC, match HCC rep 37 |
| GSM358160 |
HCC, biological rep 37 |
| GSM358161 |
cirrhosis, biological rep 13 |
| GSM358162 |
cirrhosis, biological rep 14 |
| GSM358163 |
HCC, biological rep 38 |
| GSM358164 |
cirrhosisHCC, match HCC rep 38 |
| GSM358165 |
cirrhosis, biological rep 15 |
| GSM358166 |
cirrhosisHCC, biological rep 1 |
| GSM358167 |
cirrhosisHCC, match HCC rep 3 |
| GSM358168 |
cirrhosis, biological rep 16 |
| GSM358169 |
cirrhosis, biological rep 17 |
| GSM358170 |
cirrhosis, biological rep 18 |
| GSM358171 |
HCC, biological rep 39 |
| GSM358172 |
cirrhosis, biological rep 19 |
| GSM358173 |
HCC, biological rep 40 |
| GSM358174 |
cirrhosisHCC, match HCC rep 40 |
| GSM358175 |
cirrhosis, biological rep 20 |
| GSM358176 |
cirrhosis, biological rep 21 |
| GSM358177 |
cirrhosis, biological rep 22 |
| GSM358178 |
cirrhosis, biological rep 23 |
| GSM358179 |
cirrhosis, biological rep 24 |
| GSM358180 |
cirrhosis, biological rep 25 |
| GSM358181 |
cirrhosis, biological rep 26 |
| GSM358182 |
cirrhosis, biological rep 27 |
| GSM358183 |
cirrhosis, biological rep 28 |
| GSM358184 |
cirrhosis, biological rep 29 |
| GSM358185 |
cirrhosis, biological rep 30 |
| GSM358186 |
cirrhosis, biological rep 31 |
| GSM358187 |
HCC, biological rep 41 |
| GSM358188 |
cirrhosis, biological rep 32 |
| GSM358189 |
cirrhosisHCC, match HCC rep 42 |
| GSM358190 |
HCC, biological rep 42 |
| GSM358191 |
HCC, biological rep 43 |
| GSM358192 |
cirrhosisHCC, match HCC rep 43 |
| GSM358193 |
cirrhosis, biological rep 33 |
| GSM358194 |
cirrhosis, biological rep 34 |
| GSM358195 |
cirrhosis, biological rep 35 |
| GSM358196 |
cirrhosisHCC, match HCC rep 44 |
| GSM358197 |
HCC, biological rep 44 |
| GSM358198 |
cirrhosisHCC, match HCC rep 44-2 |
| GSM358199 |
HCC, biological rep 45 |
| GSM358200 |
cirrhosisHCC, match HCC rep 45 |
| GSM358201 |
cirrhosis, biological rep 36 |
| GSM358202 |
cirrhosisHCC, biological rep 2 |
| GSM358203 |
cirrhosis, biological rep 37 |
| GSM358204 |
HCC, biological rep 46 |
| GSM358205 |
cirrhosis, biological rep 38 |
| GSM358206 |
cirrhosis, biological rep 39 |
| GSM358207 |
HCC, biological rep 47 |
| GSM358208 |
cirrhosis, biological rep 40 |
| GSM358209 |
Normal, biological rep 1 |
| GSM358210 |
Normal, biological rep 2 |
| GSM358211 |
Normal, biological rep 3 |
| GSM358212 |
Normal, biological rep 4 |
| GSM358213 |
Normal, biological rep 5 |
| GSM358214 |
Normal, biological rep 6 |
| GSM358215 |
Normal, biological rep 7 |
| GSM358216 |
Normal, biological rep 8 |
| GSM358217 |
Normal, biological rep 9 |
| GSM358218 |
Normal, biological rep 10 |
| GSM358219 |
Normal, biological rep 11 |
| GSM358220 |
Normal, biological rep 12 |
| GSM358221 |
Normal, biological rep 13 |
| GSM358222 |
Normal, biological rep 14 |
| GSM358223 |
Normal, biological rep 15 |
| GSM358224 |
Normal, biological rep 16 |
| GSM358225 |
Normal, biological rep 17 |
| GSM358226 |
Normal, biological rep 18 |
| GSM358227 |
Normal, biological rep 19 |
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| Relations |
| BioProject |
PRJNA111433 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE14323_RAW.tar |
405.9 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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