GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE141560
Query DataSets for GSE141560
Status
Public on Oct 19, 2022
Title
Hematopoietic progenitor cells
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
Has this study been published? Please
login
to update or
notify GEO
.
Submission date
Dec 06, 2019
Last update date
Oct 22, 2022
Contact name
Junichiro Takano
E-mail(s)
junichiro.takano@riken.jp
Organization name
RIKEN
Department
IMS
Lab
Developmental Genetics
Street address
Tsurumi-ku-Suehirocho-1-7-22
City
Yokohama-shi
State/province
Kanagawa-kwn
ZIP/Postal code
230-0045
Country
Japan
Platforms (3)
GPL18480
Illumina HiSeq 1500 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (154)
Less...
More...
GSM4205653
RNA-seq_Pcgf1_fl/fl_1
GSM4205654
RNA-seq_Pcgf1_-/-_1
GSM4205655
RNA-seq_Pcgf1_fl/fl_2
GSM4205656
RNA-seq_Pcgf1_-/-_2
GSM4205661
RNA-seq_LMPP_Pcgf1_fl/fl_1
GSM4205662
RNA-seq_LMPP_Pcgf1_-/-_1
GSM4205663
RNA-seq_LMPP_Pcgf1_fl/fl_2
GSM4205664
RNA-seq_LMPP_Pcgf1_-/-_2
GSM4206934
Pcgf1_f/f_input_1
GSM4206935
Pcgf1_f/f_input_2
GSM4206936
Pcgf1_-/-_input 1
GSM4206937
Pcgf1_-/-_input 2
GSM4206938
NC_for_Pcgf1
GSM4206939
FLAG_PCGF1_1
GSM4206940
FLAG_PCGF1_2
GSM4206941
Pcgf1_f/f_RING1B_1
GSM4206942
Pcgf1_f/f_RING1B_2
GSM4206943
Pcgf1_-/-_RING1B_1
GSM4206944
Pcgf1_-/-_RING1B_2
GSM4206945
Ring1A/B_-/-_RING1B
GSM4206952
Pcgf1_f/f_SUZ12_1
GSM4206953
Pcgf1_f/f_SUZ12_2
GSM4206954
Pcgf1_-/-_SUZ12_1
GSM4206955
Pcgf1_-/-_SUZ12_2
GSM4206956
Pcgf1_f/f_H3K27me3_spike_in_1
GSM4206957
Pcgf1_f/f_H3K27me3_spike_in_2
GSM4206958
Pcgf1_-/-_H3K27me3_spike_in_1
GSM4206959
Pcgf1_-/-_H3K27me3_spike_in_2
GSM4206960
Pcgf1_f/f_H3K27ac_1
GSM4206961
Pcgf1_f/f_H3K27ac_2
GSM4206962
Pcgf1_f/f_H3K27me3_1
GSM4206963
Pcgf1_f/f_H3K27me3_2
GSM4206964
Pcgf1_-/-_H3K27me3_1
GSM4206965
Pcgf1_-/-_H3K27me3_2
GSM4206966
Pcgf1_f/f_Pol2_1
GSM4206967
Pcgf1_f/f_Pol2_2
GSM4206968
Pcgf1_f/f_PHC2_1
GSM4206969
Pcgf1_f/f_PHC2_2
GSM4206970
Pcgf1_-/-_PHC2_1
GSM4206971
Pcgf1_-/-_PHC2_2
GSM4206972
Pcgf1_f/f_H2A.Z_1
GSM4206973
Pcgf1_f/f_H2A.Z_2
GSM4206974
Pcgf1_-/-_H2A.Z_1
GSM4206975
Pcgf1_-/-_H2A.Z_2
GSM4206980
LSK_Pcgf1_f/f_H3K27me3_spike_in_1
GSM4206981
LSK_Pcgf1_f/f_H3K27me3_spike_in_2
GSM4206982
LSK_Pcgf1_-/-_H3K27me3_spike_in_1
GSM4206983
LSK_Pcgf1_-/-_H3K27me3_spike_in_2
GSM4206984
LSK_Pcgf1_f/f_RING1B_1
GSM4206985
LSK_Pcgf1_f/f_RING1B_2
GSM4206986
LSK_Pcgf1_-/-_RING1B_1
GSM4206987
LSK_Pcgf1_-/-_RING1B_2
GSM5065150
Pcgf1_f/f_LSK_MNaseSeq_1
GSM5065151
Pcgf1_f/f_LSK_MNaseSeq_2
GSM5065152
Pcgf1_-/-_LSK_MNaseSeq_1
GSM5065153
Pcgf1_-/-_LSK_MNaseSeq_2
GSM5065154
Pcgf1_f/f_scRNAseq
GSM5065155
Pcgf1_-/-_scRNAseq
GSM6288367
B6CBAF1/J RNA-seq_Pcgf2/4_fl/fl_1
GSM6288368
B6CBAF1/J RNA-seq_Pcgf2/4_fl/fl_2
GSM6288369
B6CBAF1/J RNA-seq_Pcgf2/4_fl/fl_3
GSM6288370
B6CBAF1/J RNA-seq_Pcgf2/4_-/-_1
GSM6288371
B6CBAF1/J RNA-seq_Pcgf2/4_-/-_2
GSM6288372
B6CBAF1/J RNA-seq_Pcgf2/4_-/-_3
GSM6288373
B6CBAF1/J RNA-seq_BCOR_fl/y_1
GSM6288374
B6CBAF1/J RNA-seq_BCOR_fl/y_2
GSM6288375
B6CBAF1/J RNA-seq_BCOR_fl/y_3
GSM6288376
B6CBAF1/J RNA-seq_BCOR_deltaE9-10_1
GSM6288377
B6CBAF1/J RNA-seq_BCOR_deltaE9-10_2
GSM6288378
B6CBAF1/J RNA-seq_BCOR_deltaE9-10_3
GSM6288379
B6CBAF1/J RNA-seq_Ring1A_-/-_Ring1B_fl/fl_1
GSM6288380
B6CBAF1/J RNA-seq_Ring1A_-/-_Ring1B_fl/fl_2
GSM6288381
B6CBAF1/J RNA-seq_Ring1A_-/-_Ring1B_fl/fl_3
GSM6288382
B6CBAF1/J RNA-seq_Ring1A_-/-_Ring1B_-/-_1
GSM6288383
B6CBAF1/J RNA-seq_Ring1A_-/-_Ring1B_-/-_2
GSM6288384
B6CBAF1/J RNA-seq_Ring1A_-/-_Ring1B_-/-_3
GSM6310957
Pcgf1_f/f_H3K27me3_1, chIP
GSM6310958
Pcgf1_f/f_H3K27me3_2, chIP
GSM6310959
Pcgf1_-/-_H3K27me3 1
GSM6310960
Pcgf1_-/-_H3K27me3 2
GSM6310961
Pcgf1_f/f_BCOR_1
GSM6310962
Pcgf1_f/f_BCOR_2
GSM6310963
Pcgf1_-/-_BCOR 1
GSM6310964
Pcgf1_-/-_BCOR 2
GSM6310965
Pcgf1_f/f_UTX_1
GSM6310966
Pcgf1_f/f_UTX_2
GSM6310967
Pcgf1_-/-_UTX_1
GSM6310968
Pcgf1_-/-_UTX_2
GSM6310969
Pcgf1_f/f_PCL2_1
GSM6310970
Pcgf1_f/f_PCL2_2
GSM6310971
Pcgf1_-/-_PCL2_1
GSM6310972
Pcgf1_-/-_PCL2_2
GSM6310973
Pcgf1_f/f_H2AK119ub_1
GSM6310974
Pcgf1_f/f_H2AK119ub_2
GSM6310975
Pcgf1_-/-_H2AK119ub_1
GSM6310976
Pcgf1_-/-_H2AK119ub_2
GSM6310977
Negetive control for Ty1-Pcgf1_1
GSM6310978
Negetive control for Ty1-Pcgf1_2
GSM6310979
Ty1 Pcgf1 (Bulk)_1
GSM6310980
Ty1 Pcgf1 (Bulk)_2
GSM6310981
Ty1 Pcgf1 (Nascent DNA)_1
GSM6310982
Ty1 Pcgf1 (Nascent DNA)_2
GSM6310983
BCOR delta E9-10 H3K27me3 1
GSM6310984
BCOR delta E9-10 H3K27me3 2
GSM6310985
BCOR WT H3K27me3 1
GSM6310986
BCOR WT H3K27me3 2
GSM6310987
Pcgf2/4 f/f H3K27me3 1
GSM6310988
Pcgf2/4 f/f H3K27me3 2
GSM6310989
Pcgf2/4 -/- H3K27me3 1
GSM6310990
Pcgf2/4 -/- H3K27me3 2
GSM6310991
BCOR WT RING1B 1
GSM6310992
BCOR WT RING1B 2
GSM6310993
BCOR delta E9-10 RING1B 1
GSM6310994
BCOR delta E9-10 RING1B 2
GSM6310995
Pcgf2/4 f/f RING1B 1
GSM6310996
Pcgf2/4 f/f RING1B 2
GSM6310997
Pcgf2/4 -/- RING1B 1
GSM6310998
Pcgf2/4 -/- RING1B 2
GSM6310999
MINCE-Seq WT1
GSM6311000
MINCE-Seq WT2
GSM6311001
MINCE-Seq KO1
GSM6311002
MINCE-Seq KO2
GSM6311003
MINCE-Seq WT + ACBl1 1
GSM6311004
MINCE-Seq WT + ACBl1 2
GSM6311005
MINCE-Seq KO + ACBl1 1
GSM6311006
MINCE-Seq KO + ACBl1 2
GSM6311007
MNase-Seq WT1
GSM6311008
MNase-Seq WT2
GSM6311009
MNase-Seq KO1
GSM6311010
MNase-Seq KO2
GSM6311011
MNase-Seq WT + ACBl1 1
GSM6311012
MNase-Seq WT + ACBl1 2
GSM6311013
MNase-Seq KO + ACBl1 1
GSM6311014
MNase-Seq KO + ACBl1 2
GSM6311015
Pcgf2/4 f/f PHC2 1
GSM6311016
Pcgf2/4 f/f PHC2 2
GSM6311017
Pcgf2/4 -/- PHC2 1
GSM6311018
Pcgf2/4 -/- PHC2 2
GSM6311019
Pcgf1_f/f_KDM2B_1
GSM6311020
Pcgf1_f/f_KDM2B_2
GSM6311021
Pcgf1_-/-_KDM2B_1
GSM6311022
Pcgf1_-/-_KDM2B_2
GSM6311023
Pcgf1_f/f_H2AK119ub_1 [FC00472]
GSM6311024
Pcgf1_f/f_H2AK119ub_2 [FC00472]
GSM6311025
Pcgf1_-/-_H2AK119ub_1 [FC00472]
GSM6311026
Pcgf1_-/-_H2AK119ub_2 [FC00472]
GSM6311027
Ring1a -/- 1b -/- H2AK119ub 1
GSM6311028
Ring1a -/- 1b -/- H2AK119ub 2
GSM6311029
Pcgf1_f/f_JARID2_1
GSM6311030
Pcgf1_f/f_JARID2_2
GSM6311031
Pcgf1_-/-_JARID2_1
GSM6311032
Pcgf1_-/-_JARID2_2
GSM6311033
ESC RING1B
GSM6311034
ESCSUZ12
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE141523
Transcriptommic profiling of hematopoietic progenitor cells following PCGF1 loss
GSE141559
Gene regulation by PCGF1 in hematopoietic progenitor cells [ChIP, MNaseSeq]
GSE166171
Gene regulation by PCGF1 in hematopoietic progenitor cells
GSE207478
Transcriptommic profiling of hematopoietic progenitor cells following PCGF1 loss [RNA-Seq]
GSE207719
Gene regulation by PCGF1 in hematopoietic progenitor cells [ChIP and MNaseSeq]
Relations
BioProject
PRJNA593949
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE141560_RAW.tar
7.4 Gb
(http)
(custom)
TAR (of BW, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|