|
| Status |
Public on Dec 08, 2019 |
| Title |
Co-opted transposons help perpetuate conserved higher-order chromosomal structures |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
Co-option of transposable elements maintains conserved 3D genome structures via CTCF binding site turnover in human and mouse.
|
| |
|
| Overall design |
in situ HiC and in situ Hybrid-capture HiC (HiC^2) were generated for L1M3f-del and LTR41-del GM12878 cell lines
|
| |
|
| Contributor(s) |
Choudhary MN, Wang T |
| Citation(s) |
31973766 |
| |
| Submission date |
Dec 05, 2019 |
| Last update date |
Mar 09, 2020 |
| Contact name |
Daofeng Li |
| E-mail(s) |
lidaof@gmail.com
|
| Phone |
(314) 286-0866
|
| Organization name |
Washington University in St. Louis
|
| Department |
Genetics
|
| Lab |
Ting Wang Lab
|
| Street address |
4515 McKinley Avenue
|
| City |
SAINT LOUIS |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL15520 |
Illumina MiSeq (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL22790 |
Illumina MiniSeq (Homo sapiens) |
|
| Samples (32)
|
|
| Relations |
| BioProject |
PRJNA593858 |
| SRA |
SRP234897 |
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