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GEO accession:
Series GSE141488
Query DataSets for GSE141488
Status
Public on May 31, 2021
Title
Variant PCGF1-PRC1 links PRC2 recruitment with induced transcriptional inactivation at target genes
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34504070
Submission date
Dec 04, 2019
Last update date
Sep 29, 2021
Contact name
Hiroki Sugishita
E-mail(s)
hiroki.sugishita@riken.jp
Organization name
RIKEN
Department
IMS
Lab
Laboratory for Developmental Genetics
Street address
1-7-22, Suehiro-cho
City
Tsurumi-ku,Yokohama
State/province
Kanagawa
ZIP/Postal code
230-0045
Country
Japan
Platforms (3)
GPL18480
Illumina HiSeq 1500 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (183)
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GSM4204517
RING1B_ERT2-Cre_Pcgf1Control_ES_rep1
GSM4204518
RING1B_ERT2-Cre_Pcgf1Mutant_ES_rep1
GSM4204519
RING1B_ERT2-Cre_Pcgf1Control_EB_rep1
GSM4204520
RING1B_ERT2-Cre_Pcgf1Mutant_EB_rep1
GSM4204521
RING1B_ERT2-Cre_Pcgf1Control_ES_rep2
GSM4204522
RING1B_ERT2-Cre_Pcgf1Mutant_ES_rep2
GSM4204523
RING1B_ERT2-Cre_Pcgf1Control_EB_rep2
GSM4204524
RING1B_ERT2-Cre_Pcgf1Mutant_EB_rep2
GSM4204525
TY1_ERT2-Cre_Pcgf1Mutant+hPCGF1TY1_ES_rep1
GSM4204526
TY1_ERT2-Cre_Pcgf1Mutant+hPCGF1TY1_EB_rep1
GSM4204527
TY1_ERT2-Cre_Pcgf1Mutant+hPCGF1TY1_ES_rep2
GSM4204528
TY1_ERT2-Cre_Pcgf1Mutant+hPCGF1TY1_EB_rep2
GSM4204529
TY1_ERT2-Cre_Pcgf1Mutant_ES_rep1
GSM4204530
TY1_ERT2-Cre_Pcgf1Mutant_EB_rep1
GSM4204531
KDM2B_ERT2-Cre_Pcgf1Control_ES_rep1
GSM4204532
KDM2B_ERT2-Cre_Pcgf1Mutant_ES_rep1
GSM4204533
KDM2B_ERT2-Cre_Pcgf1Control_EB_rep1
GSM4204534
KDM2B_ERT2-Cre_Pcgf1Mutant_EB_rep1
GSM4204535
KDM2B_ERT2-Cre_Pcgf1Control_ES_rep2
GSM4204536
KDM2B_ERT2-Cre_Pcgf1Mutant_ES_rep2
GSM4204537
KDM2B_ERT2-Cre_Pcgf1Control_EB_rep2
GSM4204538
KDM2B_ERT2-Cre_Pcgf1Mutant_EB_rep2
GSM4204539
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Control_ES_rep1
GSM4204540
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_ES_rep1
GSM4204541
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Control_EB_rep1
GSM4204542
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_EB_rep1
GSM4204543
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Control_ES_rep2
GSM4204544
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_ES_rep2
GSM4204545
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Control_EB_rep2
GSM4204546
RING1B_ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_EB_rep2
GSM4204547
H3K27me3_ERT2-Cre_Pcgf1Control_ES_rep1
GSM4204548
H3K27me3_ERT2-Cre_Pcgf1Mutant_ES_rep1
GSM4204549
H3K27me3_ERT2-Cre_Pcgf1Control_EB_rep1
GSM4204550
H3K27me3_ERT2-Cre_Pcgf1Mutant_EB_rep1
GSM4204551
H2AK119ub_ERT2-Cre_Pcgf1Control_ES_rep1
GSM4204552
H2AK119ub_ERT2-Cre_Pcgf1Mutant_ES_rep1
GSM4204553
H2AK119ub_ERT2-Cre_Pcgf1Control_EB_rep1
GSM4204554
H2AK119ub_ERT2-Cre_Pcgf1Mutant_EB_rep1
GSM4204555
H3K27me3_ERT2-Cre_Pcgf1Control_ES_rep2
GSM4204556
H3K27me3_ERT2-Cre_Pcgf1Mutant_ES_rep2
GSM4204557
H3K27me3_ERT2-Cre_Pcgf1Control_EB_rep2
GSM4204558
H3K27me3_ERT2-Cre_Pcgf1Mutant_EB_rep2
GSM4204559
H2AK119ub_ERT2-Cre_Pcgf1Control_ES_rep2
GSM4204560
H2AK119ub_ERT2-Cre_Pcgf1Mutant_ES_rep2
GSM4204561
H2AK119ub_ERT2-Cre_Pcgf1Control_EB_rep2
GSM4204562
H2AK119ub_ERT2-Cre_Pcgf1Mutant_EB_rep2
GSM4204563
H3K27me3_CPM_Control_ES_rep1
GSM4204564
H3K27me3_CPM_Mutant_ES_rep1
GSM4204565
H3K27me3_CPM_Control_EB_rep1
GSM4204566
H3K27me3_CPM_Mutant_EB_rep1
GSM4204567
H2AK119ub1_CPM_Control_ES_rep1
GSM4204568
H2AK119ub1_CPM_Mutant_ES_rep1
GSM4204569
H2AK119ub1_CPM_Control_EB_rep1
GSM4204570
H2AK119ub1_CPM_Mutant_EB_rep1
GSM4204571
H3K27me3_CPM_Control_ES_rep2
GSM4204572
H3K27me3_CPM_Mutant_ES_rep2
GSM4204573
H3K27me3_CPM_Control_EB_rep2
GSM4204574
H3K27me3_CPM_Mutant_EB_rep2
GSM4204575
H2AK119ub1_CPM_Control_ES_rep2
GSM4204576
H2AK119ub1_CPM_Mutant_ES_rep2
GSM4204577
H2AK119ub1_CPM_Control_EB_rep2
GSM4204578
H2AK119ub1_CPM_Mutant_EB_rep2
GSM4204579
H3K27me3_Dox+_Control_ES_rep1
GSM4204580
H3K27me3_Dox-_Control_ES_rep1
GSM4204581
H3K27me3_Dox+_Mutant_ES_rep1
GSM4204582
H3K27me3_Dox-_Mutant_ES_rep1
GSM4204583
H2AK119ub_Dox+_Control_ES_rep1
GSM4204584
H2AK119ub_Dox-_Control_ES_rep1
GSM4204585
H2AK119ub_Dox+_Mutant_ES_rep1
GSM4204586
H2AK119ub_Dox-_Mutant_ES_rep1
GSM4204587
H3K27ac_Dox+_Control_ES_rep1
GSM4204588
H3K27ac_Dox-_Control_ES_rep1
GSM4204589
H3K27ac_Dox+_Mutant_ES_rep1
GSM4204590
H3K27ac_Dox-_Mutant_ES_rep1
GSM4204591
H3K27me3_Dox+_Control_ES_rep2
GSM4204592
H3K27me3_Dox-_Control_ES_rep2
GSM4204593
H3K27me3_Dox+_Mutant_ES_rep2
GSM4204594
H3K27me3_Dox-_Mutant_ES_rep2
GSM4204595
H2AK119ub_Dox+_Control_ES_rep2
GSM4204596
H2AK119ub_Dox-_Control_ES_rep2
GSM4204597
H2AK119ub_Dox+_Mutant_ES_rep2
GSM4204598
H2AK119ub_Dox-_Mutant_ES_rep2
GSM4204599
H3K27ac_Dox+_Control_ES_rep2
GSM4204600
H3K27ac_Dox-_Control_ES_rep2
GSM4204601
H3K27ac_Dox+_Mutant_ES_rep2
GSM4204602
H3K27ac_Dox-_Mutant_ES_rep2
GSM4204603
ERT2-Cre_Ring1aKO_Ring1bControl_Control_ES_rep1
GSM4204604
ERT2-Cre_Ring1aKO_Ring1bControl_Mutant_ES_rep1
GSM4204605
ERT2-Cre_Ring1aKO_Ring1bControl_Control_EB_rep1
GSM4204606
ERT2-Cre_Ring1aKO_Ring1bControl_Mutant_EB_rep1
GSM4204607
ERT2-Cre_Ring1aKO_Ring1bControl_Control_ES_rep2
GSM4204608
ERT2-Cre_Ring1aKO_Ring1bControl_Mutant_ES_rep2
GSM4204609
ERT2-Cre_Ring1aKO_Ring1bControl_Control_EB_rep2
GSM4204610
ERT2-Cre_Ring1aKO_Ring1bControl_Mutant_EB_rep2
GSM4204611
ERT2-Cre_Pcgf3_Pcgf5_Control_ES_rep1
GSM4204612
ERT2-Cre_Pcgf3_Pcgf5_Mutant_ES_rep1
GSM4204613
ERT2-Cre_Pcgf3_Pcgf5_Control_EB_rep1
GSM4204614
ERT2-Cre_Pcgf3_Pcgf5_Mutant_EB_rep1
GSM4204615
ERT2-Cre_Pcgf3_Pcgf5_Control_ES_rep2
GSM4204616
ERT2-Cre_Pcgf3_Pcgf5_Mutant_ES_rep2
GSM4204617
ERT2-Cre_Pcgf3_Pcgf5_Control_EB_rep2
GSM4204618
ERT2-Cre_Pcgf3_Pcgf5_Mutant_EB_rep2
GSM4204619
ERT2-Cre_Pcgf2_Pcgf4_Control_ES_rep1
GSM4204620
ERT2-Cre_Pcgf2_Pcgf4_Mutant_ES_rep1
GSM4204621
ERT2-Cre_Pcgf2_Pcgf4_Control_EB_rep1
GSM4204622
ERT2-Cre_Pcgf2_Pcgf4_Mutant_EB_rep1
GSM4204623
ERT2-Cre_Pcgf2_Pcgf4_Control_ES_rep2
GSM4204624
ERT2-Cre_Pcgf2_Pcgf4_Mutant_ES_rep2
GSM4204625
ERT2-Cre_Pcgf2_Pcgf4_Control_EB_rep2
GSM4204626
ERT2-Cre_Pcgf2_Pcgf4_Mutant_EB_rep2
GSM4204627
ERT2-Cre_Pcgf6_Control_ES_rep1
GSM4204628
ERT2-Cre_Pcgf6_Mutant_ES_rep1
GSM4204629
ERT2-Cre_Pcgf6_Control_EB_rep1
GSM4204630
ERT2-Cre_Pcgf6_Mutant_EB_rep1
GSM4204631
ERT2-Cre_Pcgf6_Control_ES_rep2
GSM4204632
ERT2-Cre_Pcgf6_Mutant_ES_rep2
GSM4204633
ERT2-Cre_Pcgf6_Control_EB_rep2
GSM4204634
ERT2-Cre_Pcgf6_Mutant_EB_rep2
GSM4204635
ERT2-Cre_Pcgf1_Control_ES_rep1
GSM4204636
ERT2-Cre_Pcgf1_Mutant_ES_rep1
GSM4204637
ERT2-Cre_Pcgf1_Control_EB_rep1
GSM4204638
ERT2-Cre_Pcgf1_Mutant_EB_rep1
GSM4204639
ERT2-Cre_Pcgf1_Control_ES_rep2
GSM4204640
ERT2-Cre_Pcgf1_Mutant_ES_rep2
GSM4204641
ERT2-Cre_Pcgf1_Control_EB_rep2
GSM4204642
ERT2-Cre_Pcgf1_Mutant_EB_rep2
GSM4204643
ERT2-Cre_Pcgf1_Control_ES_rep3
GSM4204644
ERT2-Cre_Pcgf1_Mutant_ES_rep3
GSM4204645
ERT2-Cre_Pcgf1_Control_EB_rep3
GSM4204646
ERT2-Cre_Pcgf1_Mutant_EB_rep3
GSM4204647
ERT2-Cre_Pcgf1_Control_ES_rep4
GSM4204648
ERT2-Cre_Pcgf1_Mutant_ES_rep4
GSM4204649
ERT2-Cre_Pcgf1_Control_EB_rep4
GSM4204650
ERT2-Cre_Pcgf1_Mutant_EB_rep4
GSM4204651
ERT2-Cre_Pcgf1_Mutant_ES_rep5
GSM4204652
ERT2-Cre_Pcgf1_Control_EB_rep5
GSM4204653
ERT2-Cre_Pcgf1_Mutant_EB_rep5
GSM4204654
ERT2-Cre_Ring1aPM_Ring1bCPM_Control_ES_rep1
GSM4204655
ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_ES_rep1
GSM4204656
ERT2-Cre_Ring1aPM_Ring1bCPM_Control_EB_rep1
GSM4204657
ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_EB_rep1
GSM4204658
ERT2-Cre_Ring1aPM_Ring1bCPM_Control_ES_rep2
GSM4204659
ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_ES_rep2
GSM4204660
ERT2-Cre_Ring1aPM_Ring1bCPM_Control_EB_rep2
GSM4204661
ERT2-Cre_Ring1aPM_Ring1bCPM_Mutant_EB_rep2
GSM5087922
PCGF1_ERT2-Cre_Pcgf1Control_ES_rep1
GSM5087923
PCGF1_ERT2-Cre_Pcgf1Control_EB_rep1
GSM5087924
PCGF1_ERT2-Cre_Pcgf1Control_ES_rep2
GSM5087925
PCGF1_ERT2-Cre_Pcgf1Control_EB_rep2
GSM5087926
RING1B_ERT2-Cre_Pcgf6Control_ES_rep1
GSM5087927
RING1B_ERT2-Cre_Pcgf6Mutant_ES_rep1
GSM5087928
RING1B_ERT2-Cre_Pcgf6Control_EB_rep1
GSM5087929
RING1B_ERT2-Cre_Pcgf6Mutant_EB_rep1
GSM5087930
RING1B_ERT2-Cre_Pcgf6Control_ES_rep2
GSM5087931
RING1B_ERT2-Cre_Pcgf6Mutant_ES_rep2
GSM5087932
RING1B_ERT2-Cre_Pcgf6Control_EB_rep2
GSM5087933
RING1B_ERT2-Cre_Pcgf6Mutant_EB_rep2
GSM5087934
PCGF1_ERT2-Cre_EedControl_ES_rep1
GSM5087935
PCGF1_ERT2-Cre_EedMutant_ES_rep1
GSM5087936
PCGF1_ERT2-Cre_EedControl_EB_rep1
GSM5087937
PCGF1_ERT2-Cre_EedMutant_EB_rep1
GSM5087938
PCGF1_ERT2-Cre_EedControl_ES_rep2
GSM5087939
PCGF1_ERT2-Cre_EedMutant_ES_rep2
GSM5087940
PCGF1_ERT2-Cre_EedControl_EB_rep2
GSM5087941
PCGF1_ERT2-Cre_EedMutant_EB_rep2
GSM5087942
RING1B_ERT2-Cre_Pcgf1Control_DMSO_rep1
GSM5087943
RING1B_ERT2-Cre_Pcgf1Mutant_DMSO_rep1
GSM5087944
RING1B_ERT2-Cre_Pcgf1Control_Triptolide_rep1
GSM5087945
RING1B_ERT2-Cre_Pcgf1Mutant_Triptolide_rep1
GSM5087946
RING1B_ERT2-Cre_Pcgf1Control_DMSO_rep2
GSM5087947
RING1B_ERT2-Cre_Pcgf1Mutant_DMSO_rep2
GSM5087948
RING1B_ERT2-Cre_Pcgf1Control_Triptolide_rep2
GSM5087949
RING1B_ERT2-Cre_Pcgf1Mutant_Triptolide_rep2
GSM5087950
SUZ12_ERT2-Cre_Pcgf1Control_DMSO_rep1
GSM5087951
SUZ12_ERT2-Cre_Pcgf1Mutant_DMSO_rep1
GSM5087952
SUZ12_ERT2-Cre_Pcgf1Control_Triptolide_rep1
GSM5087953
SUZ12_ERT2-Cre_Pcgf1Mutant_Triptolide_rep1
GSM5087954
SUZ12_ERT2-Cre_Pcgf1Control_DMSO_rep2
GSM5087955
SUZ12_ERT2-Cre_Pcgf1Mutant_DMSO_rep2
GSM5087956
SUZ12_ERT2-Cre_Pcgf1Control_Triptolide_rep2
GSM5087957
SUZ12_ERT2-Cre_Pcgf1Mutant_Triptolide_rep2
GSM5087958
RNAP2_ERT2-Cre_Pcgf1Control_DMSO_rep1
GSM5087959
RNAP2_ERT2-Cre_Pcgf1Control_Triptolide_rep1
This SuperSeries is composed of the following SubSeries:
GSE141485
Variant PCGF1-PRC1 links PRC2 recruitment with induced transcriptional inactivation at target genes [ChIP-seq]
GSE141486
Variant PCGF1-PRC1 links PRC2 recruitment with induced transcriptional inactivation at target genes [CUT&Tag]
GSE141487
Variant PCGF1-PRC1 links PRC2 recruitment with induced transcriptional inactivation at target genes [RNA-seq]
Relations
BioProject
PRJNA593600
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE141488_RAW.tar
6.6 Gb
(http)
(custom)
TAR (of BW, TSV)
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