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Series GSE139416 Query DataSets for GSE139416
Status Public on Nov 25, 2019
Title Genome-wide maps of CTCF in glioblastoma
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Here we have used CTCF ChIP-seq in glioblastoma to understand CTCF elements in the context of chromatin topology genome-wide.
Overall design Examination of CTCF in 2 glioblastoma cell models.
Contributor(s) Scacheri PC, Morton AR
Citation(s) 31761532
Submission date Oct 25, 2019
Last update date Feb 24, 2020
Contact name Peter Scacheri
Organization name Case Western Reserve University
Department Genetics and Genome Sciences
Lab Scacheri Lab
Street address 2109 Adelbert Road
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (2)
GSM4141365 GBM3565 CTCF ChIP-seq
GSM4141366 GSC23 CTCF ChIP-seq
This SubSeries is part of SuperSeries:
GSE139417 Functional enhancers shape extrachromosomal oncogene amplifications
BioProject PRJNA579583
SRA SRP227032

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Supplementary file Size Download File type/resource
GSE139416_RAW.tar 542.8 Mb (http)(custom) TAR (of BED, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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