|
| Status |
Public on Nov 25, 2019 |
| Title |
Functional enhancers shape extrachromosomal oncogene amplifications |
| Organisms |
Homo sapiens; synthetic construct |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
31761532 |
| Submission date |
Oct 25, 2019 |
| Last update date |
Aug 20, 2022 |
| Contact name |
Peter Scacheri |
| E-mail(s) |
pxs183@case.edu
|
| Organization name |
Case Western Reserve University
|
| Department |
Genetics and Genome Sciences
|
| Lab |
Scacheri Lab
|
| Street address |
2109 Adelbert Road
|
| City |
Cleveland |
| State/province |
OH |
| ZIP/Postal code |
44106 |
| Country |
USA |
| |
|
| Platforms (5)
|
| GPL15520 |
Illumina MiSeq (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17769 |
Illumina MiSeq (synthetic construct) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (20)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE126774 |
Genome-wide maps of active chromatin in Wilms tumor |
| GSE139414 |
Chromosome topology of the EGFR locus in glioblastoma |
| GSE139415 |
CRISPRi proliferation dropout screen of EGFR cis-regulatory elements |
| GSE139416 |
Genome-wide maps of CTCF in glioblastoma |
|
| Relations |
| BioProject |
PRJNA579579 |
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