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Series GSE128221 Query DataSets for GSE128221
Status Public on Jan 13, 2020
Title Conformation of the budding yeast pericentromere in metaphase
Organism Saccharomyces cerevisiae
Experiment type Other
Summary High-resolution Hi-C in metaphase in wild type cells with and without tension, chl4Δ with tension, and sgo1-3A and sgo1Δ without tension
 
Overall design Purpose: To determine how pericentromeric chromosome conformation changes in response to spindle tension and to the absence of pericentromeric cohesin and condensin.
 
Contributor(s) Paldi F, Marston AL
Citation(s) 32494069
Submission date Mar 13, 2019
Last update date Jun 04, 2020
Contact name Daniel Robertson
E-mail(s) daniel.robertson@ed.ac.uk
Organization name University of Edinburgh
Department Discovery Research Platform for Hidden Cell Biology
Lab Bioinformatics Core
Street address 2.28 Michael Swann Building, Kings Buildings, Mayfield Road
City Edinburgh
State/province Midlothian
ZIP/Postal code EH9 3JR
Country United Kingdom
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (7)
GSM3667460 Hi-C Wild type - No tension
GSM3667461 Hi-C Wild type - Tension
GSM3667462 Hi-C chl4Δ - Tension
This SubSeries is part of SuperSeries:
GSE104135 Convergent genes shape budding yeast pericentromeres
Relations
BioProject PRJNA526833
SRA SRP188299

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128221_RAW.tar 82.0 Mb (http)(custom) TAR (of COOL)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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