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GEO accession:
Series GSE104135
Query DataSets for GSE104135
Status
Public on Jan 13, 2020
Title
Convergent genes shape budding yeast pericentromeres
Organisms
Schizosaccharomyces pombe
;
Saccharomyces cerevisiae
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32494069
Submission date
Sep 22, 2017
Last update date
Jul 25, 2021
Contact name
Daniel Robertson
E-mail(s)
daniel.robertson@ed.ac.uk
Organization name
University of Edinburgh
Department
Discovery Research Platform for Hidden Cell Biology
Lab
Bioinformatics Core
Street address
2.28 Michael Swann Building, Kings Buildings, Mayfield Road
City
Edinburgh
State/province
Midlothian
ZIP/Postal code
EH9 3JR
Country
United Kingdom
Platforms (3)
GPL13821
Illumina HiSeq 2000 (Saccharomyces cerevisiae)
GPL19756
Illumina NextSeq 500 (Saccharomyces cerevisiae)
GPL26296
Illumina MiniSeq (Saccharomyces cerevisiae; Schizosaccharomyces pombe)
Samples (55)
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GSM2787669
BA5: 6390_Sgo1-6HA_WT+tension_Input
GSM2787670
BA6: 6390_Sgo1-6HA_WT+tension_ChIP
GSM2787671
BA7: 6390_Sgo1-6HA_WT-tension_Input
GSM2787672
BA8: 6390_Sgo1-6HA_WT-tension_ChIP
GSM2789271
WTInput+ten
GSM2789272
WTChip+ten
GSM2789273
WTInput-ten
GSM2789274
WTChip-ten
GSM2789279
AM16144_Scc1-6HA_CEN3del_tension_input
GSM2789281
AM16144_Scc1-6HA_CEN3del_no_tension_input
GSM2789283
AM16144_Scc1-6HA_CEN3del_tension_IP
GSM2789285
AM16144_Scc1-6HA_CEN3del_no_tension_IP
GSM2790499
BAR1: AM1105_no_tension_WT
GSM2790503
BAR5: AM1105_tension_WT
GSM3667460
Hi-C Wild type - No tension
GSM3667461
Hi-C Wild type - Tension
GSM3667462
Hi-C chl4Δ - Tension
GSM3667463
Hi-C sgo1-3A - No tension
GSM3667464
Hi-C sgo1Δ - No tension
GSM3667525
Scc1-6HA rad61Δ Tension input
GSM3667526
Scc1-6HA rad61Δ No tension input
GSM3667527
Scc1-6HA rad61Δ Tension IP
GSM3667528
Scc1-6HA rad61Δ No tension IP
GSM3667553
Scc1-6HA Reoriented Tension Input
GSM3667554
Scc1-6HA Reoriented No tension Input
GSM3667555
Scc1-6HA Reoriented Tension IP
GSM3667556
Scc1-6HA Reoriented No tension IP
GSM3667557
Sgo1-6HIS-3FLAG Reoriented No tension Input
GSM3667558
Sgo1-6HIS-3FLAG Reoriented No tension IP
GSM3667559
Brn1-6HIS-3FLAG Reoriented No tension Input
GSM3667560
Brn1-6HIS-3FLAG Reoriented No tension IP
GSM3668244
Sgo1-6HIS-3FLAG No tension Input
GSM3668245
Sgo1-6HIS-3FLAG No tension IP
GSM3668246
Brn1-6HIS-3FLAG No tension Input
GSM3668247
Brn1-6HIS-3FLAG No tension IP
GSM3668252
Scc1-6HA WT Tension input
GSM3668253
Scc1-6HA WT No tension input
GSM3668254
Scc1-6HA WT Tension IP
GSM3668255
Scc1-6HA WT No tension IP
GSM3668256
Scc1-6HA chl4Δ Tension input
GSM3668257
Scc1-6HA chl4Δ No tension input
GSM3668258
Scc1-6HA chl4Δ Tension IP
GSM3668259
Scc1-6HA chl4Δ No tension IP
GSM4138993
Hi-C chl4Δ - No tension
GSM4138994
Hi-C reoriented - Tension
GSM4139633
Scc1-6HA PTC1-pURA3-URA3-MED2 Input
GSM4139634
Scc1-6HA PTC1-pURA3-URA3-MED2 IP
GSM4139635
Scc1-6HA MED2-pURA3-URA3-PTC1 Input
GSM4139636
Scc1-6HA MED2-pURA3-URA3-PTC1 IP
GSM4139637
Sgo1-6HA No tension Input
GSM4139638
Sgo1-6HA No tension IP
GSM4139639
Brn1-6HA No tension Input
GSM4139640
Brn1-6HA No tension IP
GSM4139641
Scc1-6HA No tension Input
GSM4139642
Scc1-6HA No tension IP
This SuperSeries is composed of the following SubSeries:
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GSE104009
Sgo1 ChIP-seq for wild type cells arrested in metaphase with and without tension
GSE104081
ChIP-Seq for wild type strains arrested in metaphase with and without tension
GSE104082
Scc1 ChIP-Seq in a strain where the centromere on chromosome III has been moved to an ectopic site
GSE104134
RNA-Seq on wild type and Linear Minichromosome strains arrested in metaphase
GSE128221
Conformation of the budding yeast pericentromere in metaphase
GSE128225
Calibrated Scc1 ChIP-seq for wild type and rad61Δ strains arrested in metaphase with and without tension
GSE128227
Calibrated Scc1, Sgo1 and Brn1 ChIP-seq in metaphase with and without tension, in strains where convergent genes at pericentromere borderes are rearranged into a tandem orientation
GSE128236
Calibrated Sgo1 and Brn1 ChIP-seq for wild type strains arrested in metaphase without tension
GSE128238
Calibrated Scc1 ChIP-seq for wild type and chl4Δ strains arrested in metaphase with and without tension
Relations
BioProject
PRJNA411781
Download family
Format
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Supplementary file
Size
Download
File type/resource
GSE104135_RAW.tar
2.5 Gb
(http)
(custom)
TAR (of BW, COOL)
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