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Series GSE125238 Query DataSets for GSE125238
Status Public on Jul 08, 2019
Title CHIP-seq analysis about Histones and Zscan4 after Zscan4 overexpression
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Transcription factor Zscan4 was newly discovered to be a marker of the intermediate state of 2-cell like cells . In addition, the WGCNA discovered a strong positive correlation between the expression of Zscan4 and that of MT2/MERVL .Hence, we examined the possibility for Zscan4 as an activator of MT2/MERVL.
Overall design We overexpressed Zscan4 in J1. We performed CHIP-seq analysis in order to exam H3K27ac, H3K4me1, H3K14ac and Zscan4 after Zscan4 overexpression.
Contributor(s) Zhang W, Chen R, Chen F, Lu X
Citation(s) 31304534
Submission date Jan 17, 2019
Last update date Mar 29, 2020
Contact name Weiyu Zhang
Phone 18902012072
Organization name Nankai University
Street address No.38 Tongyan Road, Jinnan District
City Tainjin
ZIP/Postal code 300350
Country China
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (12)
GSM3423600 OE_Input
GSM3423601 OE_Zscan4
GSM3566927 Wildtype ESC input of H3K27ac and H3K14ac
BioProject PRJNA515624
SRA SRP179953

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Supplementary file Size Download File type/resource
GSE125238_RAW.tar 1.4 Gb (http)(custom) TAR (of BW) 233.2 Mb (ftp)(http) BW
GSE125238_Zscan4_peaks.bed.gz 66.5 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data provided as supplementary file

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