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| Status |
Public on Jan 16, 2019 |
| Title |
The dominant and poor penetrant phenotypes of the maize mutation Unstable factor for orange1 are caused by DNA methylation changes at a linked transposon |
| Organism |
Zea mays |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Transcriptional analysis of the Ufo1-1 mutant allele and wild type plants were used to identify the candidate gene using a k-mer based approach. The transcriptome data also revealed the altered expression of carbohydrate metabolic genes, which translates into elevated levels of soluble sugars in leaves and light-induced lesions found in mature Ufo1-1 leaves.
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| Overall design |
Genome-wide RNA and sRNA profiling was done by Illumina TruSeq sample preparation followed by high-throughput sequencing with Illumina HiSeq 2000 platform.
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| Contributor(s) |
Meyers BC, Chopra S, Lee T, Wittmeyer K |
| Citation(s) |
30563848 |
| |
| Submission date |
Jul 27, 2018 |
| Last update date |
Jan 18, 2019 |
| Contact name |
Blake C. Meyers |
| E-mail(s) |
bmeyers@danforthcenter.org
|
| Phone |
314-587-1422
|
| Organization name |
Donald Danforth Plant Science Center
|
| Lab |
Meyers lab
|
| Street address |
975 N Warson Road
|
| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63132 |
| Country |
USA |
| |
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| Platforms (1) |
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| Samples (33)
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| Relations |
| BioProject |
PRJNA483200 |
| SRA |
SRP155527 |
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