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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 18, 2012 |
| Title |
Illumina HiSeq 2000 (Zea mays) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Zea mays |
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| Submission date |
Apr 18, 2012 |
| Last update date |
Jun 20, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1780)
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GSM918108, GSM918109, GSM943461, GSM943462, GSM943463, GSM943464
GSM943465, GSM943466, GSM943467, GSM943468, GSM943469, GSM943470, GSM943471, GSM943472, GSM943473, GSM943474, GSM943475, GSM943476, GSM943477, GSM943478, GSM943479, GSM943480, GSM1057274, GSM1057275, GSM1057276, GSM1057280, GSM1057281, GSM1057282, GSM1057283, GSM1172780, GSM1172781, GSM1172782, GSM1177812, GSM1177813, GSM1177814, GSM1177815, GSM1177816, GSM1177817, GSM1177818, GSM1177819, GSM1177820, GSM1177821, GSM1177822, GSM1177823, GSM1178886, GSM1178887, GSM1223590, GSM1223592, GSM1223595, GSM1223597, GSM1236540, GSM1236541, GSM1236542, GSM1236543, GSM1250256, GSM1250257, GSM1250258, GSM1250259, GSM1250260, GSM1250261, GSM1250262, GSM1250263, GSM1250264, GSM1250265, GSM1250266, GSM1250267, GSM1250268, GSM1250269, GSM1250270, GSM1250271, GSM1250272, GSM1250273, GSM1250274, GSM1250275, GSM1250276, GSM1250277, GSM1250278, GSM1250279, GSM1250280, GSM1251894, GSM1251895, GSM1251896, GSM1251897, GSM1251898, GSM1251899, GSM1251900, GSM1251901, GSM1251902, GSM1251903, GSM1251904, GSM1251905, GSM1251906, GSM1251907, GSM1251908, GSM1251909, GSM1251910, GSM1251911, GSM1259393, GSM1259394, GSM1259395, GSM1259396, GSM1259397, GSM1259398, GSM1259399, GSM1259400, GSM1259401, GSM1259402, GSM1277437, GSM1277438, GSM1277440, GSM1277441, GSM1277442, GSM1277443, GSM1277444, GSM1277445, GSM1277446, GSM1277447, GSM1277448, GSM1277449, GSM1277450, GSM1277451, GSM1277452, GSM1277453, GSM1277454, GSM1277455, GSM1277456, GSM1277457, GSM1277458, GSM1277459, GSM1277460, GSM1277461, GSM1305173, GSM1305174, GSM1305175, GSM1305176, GSM1305177, GSM1305178, GSM1309038, GSM1309039, GSM1309403, GSM1309404, GSM1311367, GSM1311368, GSM1311369, GSM1311370, GSM1311371, GSM1311372, GSM1311373, GSM1311374, GSM1311375, GSM1311376, GSM1311377, GSM1311378, GSM1311379, GSM1311380, GSM1311381, GSM1311382, GSM1311383, GSM1311384, GSM1311385, GSM1311386, GSM1311387, GSM1311388, GSM1311389, GSM1311390, GSM1311391, GSM1311392, GSM1311393, GSM1311394, GSM1311395, GSM1311396, GSM1311397, GSM1311398, GSM1311399, GSM1311400, GSM1311401, GSM1311402, GSM1311403, GSM1311404, GSM1311405, GSM1311406, GSM1311407, GSM1311408, GSM1311409, GSM1311410, GSM1311411, GSM1311412, GSM1311413, GSM1311414, GSM1311415, GSM1311416, GSM1311417, GSM1311418, GSM1311419, GSM1311420, GSM1311421, GSM1311422, GSM1311423, GSM1311424, GSM1311425, GSM1311426, GSM1311427, GSM1311428, GSM1311429, GSM1311430, GSM1311431, GSM1311432, GSM1311433, GSM1311434, GSM1311435, GSM1311436, GSM1311437, GSM1311438, GSM1311439, GSM1311440, GSM1311441, GSM1341967, GSM1341968, GSM1341969, GSM1341970, GSM1341971, GSM1341972, GSM1341973, GSM1341974, GSM1341975, GSM1342517, GSM1342518, GSM1342519, GSM1350106, GSM1350107, GSM1374101, GSM1374102, GSM1374103, GSM1374104, GSM1374105, GSM1374106, GSM1383176, GSM1383177, GSM1383178, GSM1383179, GSM1383180, GSM1383181, GSM1383182, GSM1383183, GSM1383184, GSM1383185, GSM1383186, GSM1383187, GSM1413338, GSM1413339, GSM1428962, GSM1428963, GSM1428964, GSM1428965, GSM1428966, GSM1428967, GSM1440504, GSM1440505, GSM1440506, GSM1440507, GSM1440508, GSM1440509, GSM1440510, GSM1440511, GSM1440512, GSM1440513, GSM1440514, GSM1440515, GSM1502506, GSM1502507, GSM1502508, GSM1502509, GSM1502510, GSM1502511, GSM1502512, GSM1502513, GSM1502514, GSM1502515, GSM1502516, GSM1502517, GSM1502518, GSM1502519, GSM1502520, GSM1502521, GSM1502522, GSM1502523, GSM1502524, GSM1502525, GSM1502526, GSM1502527, GSM1502528, GSM1502529, GSM1511447, GSM1511448, GSM1514408, GSM1514409, GSM1514410, GSM1514411, GSM1514412, GSM1514413, GSM1514414, GSM1514415, GSM1514416, GSM1514417, GSM1514418, GSM1514419, GSM1514420, GSM1514421, GSM1514422, GSM1514423, GSM1514424, GSM1514425, GSM1514426, GSM1514427, GSM1514428, GSM1514429, GSM1514430, GSM1514431, GSM1514432, GSM1514433, GSM1514434, GSM1514435, GSM1514436, GSM1514437, GSM1514438, GSM1514439, GSM1514440, GSM1514441, GSM1514442, GSM1514443, GSM1514444, GSM1514445, GSM1514446, GSM1514447, GSM1514448, GSM1514449, GSM1514450, GSM1514451, GSM1514452, GSM1514453, GSM1514454, GSM1514455, GSM1514456, GSM1514457, GSM1514458, GSM1514459, GSM1514460, GSM1514461, GSM1514462, GSM1514463, GSM1514464, GSM1514465, GSM1514466, GSM1514467, GSM1514468, GSM1514469, GSM1514470, GSM1514471, GSM1514472, GSM1514473, GSM1514474, GSM1514475, GSM1514476, GSM1514477, GSM1514478, GSM1514479, GSM1514480, GSM1514481, GSM1514482, GSM1514483, GSM1514484, GSM1514485, GSM1514486, GSM1514487, GSM1514488, GSM1514489, GSM1514490, GSM1514491, GSM1514492, GSM1514493, GSM1514494, GSM1514495, GSM1514496, GSM1514497, GSM1514498, GSM1514499, GSM1514500, GSM1514501, GSM1514502, GSM1514503, GSM1514504, GSM1514505, GSM1514506, GSM1514507, GSM1514508, GSM1514509, GSM1514510, GSM1514511, GSM1514512, GSM1514513, GSM1514514, GSM1514515, GSM1514516, GSM1514517, GSM1514518, GSM1514519, GSM1514520, GSM1514521, GSM1514522, GSM1514523, GSM1514524, GSM1514525, GSM1514526, GSM1514527, GSM1514528, GSM1514529, GSM1514530, GSM1514531, GSM1514532, GSM1514533, GSM1514534, GSM1514535, GSM1514536, GSM1514537, GSM1514538, GSM1514539, GSM1514540, GSM1514541, GSM1514542, GSM1514543, GSM1514544, GSM1514545, GSM1514546, GSM1514547, GSM1514548, GSM1514549, GSM1514550, GSM1514551, GSM1514552, GSM1514553, GSM1514554, GSM1514555, GSM1514556, GSM1514557, GSM1514558, GSM1514559, GSM1514560, GSM1514561, GSM1514562, GSM1514563, GSM1514564, GSM1514565, GSM1514566, GSM1514567, GSM1514568, GSM1514569, GSM1514570, GSM1514571, GSM1514572, GSM1514573, GSM1514574, GSM1514575, GSM1514576, GSM1514577, GSM1514578, GSM1514579, GSM1514580, GSM1514581, GSM1514582, GSM1514583, GSM1514584, GSM1514585, GSM1514586, GSM1514587, GSM1514588, GSM1514589, GSM1514590, GSM1514591, GSM1514592, GSM1514593, GSM1514594, GSM1514595, GSM1514596, GSM1514597, GSM1514598, GSM1514599, GSM1514600, GSM1514601, GSM1514602, GSM1514603, GSM1514604, GSM1514605, GSM1514606, GSM1514607, GSM1514608, GSM1514609, GSM1514610, GSM1514611, GSM1514612, GSM1514613...
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| Series (110)
|
| GSE35562 |
Differentiated Truncation and Uridylation Patterns of miRNAs in Arabidopsis and Rice hen1 Mutants Suggest miRNAs May Re-program RISC |
| GSE37411 |
Small RNA sequencing in maize hybrids and inbreds |
| GSE38487 |
Unraveling the KNOTTED1 regulatory network in maize meristems |
| GSE43138 |
Fine structure analysis and epigenetic properties of a de novo centromere on a chromosome fragment in maize |
| GSE43140 |
Functional centromere lost centromeric specific sequences but gain new sequences from nearby chromosomal arm. |
| GSE48208 |
Genome-wide transcriptome analysis of maize (Zea mays c.v. Nathan) plants infected by Colletotrichum graminicola strains. |
| GSE48425 |
Dynamic Expression of Imprinted Genes Associates with Maternally Controlled Nutrient Allocation during Maize Endosperm Development |
| GSE50557 |
Genome-wide analysis of leafbladeless1-regulated and phased small RNAs provides new insights into the tas3 pathway in maize- |
| GSE51048 |
Regulatory Modules Controlling Maize Inflorescence Architecture: ChIP-seq data |
| GSE51050 |
Regulatory Modules Controlling Maize Inflorescence Architecture |
| GSE51662 |
Distinct small RNA populations act antagonistically in formation of heterosis |
| GSE51742 |
Expression of ATHB17 in Maize Increases Ear Weight at Silking |
| GSE52103 |
Role of the Snf2-Related Protein required to maintain repression1 (RMR1) in Heterosis |
| GSE52293 |
Spatiotemporal and cell-type dependent phasiRNA biogenesis in maize male reproduction (small RNA-seq) |
| GSE52318 |
Spatiotemporal and cell-type dependent phasiRNA biogenesis in maize male reproduction |
| GSE52879 |
The dicerlike1 homologue, fuzzy tassel, is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize |
| GSE53995 |
The distinct transcription patterns correlate with the differential growth responses to salt stress in maize roots |
| GSE54166 |
Nascent transcription defined by RNA polymerase IV in Zea mays |
| GSE54184 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and fl4 mutant Transcriptomes |
| GSE54274 |
Exploring the mechanism of C4 photosynthetic differentiation through a unified comparative analysis of maize and rice leaf transcriptomes |
| GSE55701 |
Genomic features shaping the landscape of meiotic double-strand break hotspots in maize [ChIP-Seq] |
| GSE55730 |
Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome |
| GSE56004 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and pro1 mutant Transcriptomes |
| GSE57075 |
Transcript Profiling of Maize Embryo Sac and Preliminary Identification of Genes Involved in Embryo Sac-Pollen Tube Interactions |
| GSE57466 |
Maize seedling mRNA-seq of splicing factor mutants and their wild-type siblings |
| GSE58549 |
DNA Methylation Identifies Epigenetic Variation across Embryo and Endosperm in Maize (Zea may) |
| GSE59124 |
Sequential centromere shift via de novo formation in maize |
| GSE59613 |
Genome-wide expression profiling reveals dominant roles of the cob in maize ear development and low nitrogen response at the silking stage |
| GSE61333 |
Transcriptomic analyses indicate that ligule initiation recapitulates gene expression patterns that occur at lateral branching |
| GSE61700 |
Identification and characterization of novel maize miRNAs involved in different genetic background |
| GSE61810 |
The Role of cis Regulatory Evolution in Maize Domestication |
| GSE61954 |
FASCIATED EAR4 encodes a bZIP transcription factor that controls shoot meristem size in maize |
| GSE62778 |
RNA sequencing of laser-capture microdissected compartments of the maize kernel identifies regulatory modules associated with endosperm cell differentiation |
| GSE63429 |
Genetic and Molecular Characterization of Submergence Response Identifies Subtol6 as a Major Submergence Tolerance Locus in Maize |
| GSE63991 |
Genome-wide characterization of cis-acting DNA targets of Opaque2 in maize |
| GSE64641 |
Epigenetic characteristics and gene-expression analysis of a de novo centromere in maize |
| GSE64665 |
Conserved Molecular Program for Root Development in Diverse Plants |
| GSE66986 |
Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development |
| GSE67550 |
Developmental changes in transcriptomes of two key transport tissues in maize kernels: The Maternal Transfer Zone (MATZ) and Basal Endosperm Transfer Layer (BETL) |
| GSE67551 |
Comparative histone modification profiling revealed developmentally regulated acetylation on upstream promoters of C4 genes and potential C4 regulators |
| GSE67722 |
Interactions of C4 subtype metabolic activities and transport in maize are revealed through the characterization of dct2 mutants |
| GSE68510 |
The maize pericarp color1 gene is regulated by RdDM and non-RdDM types of chromatin silencing |
| GSE70487 |
Genome-wide characterization of maize small RNA loci and their regulation in the required to maintain repression6-1 (rmr6-1) mutant and long-term abiotic stresses |
| GSE70609 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and ZmMADS47 RNAi mutant Transcriptomes |
| GSE70612 |
miRNA alterations are an important mechanism in the adaptation of maize to a low-phosphate environment |
| GSE71046 |
Maize (Zea mays) leaf transcriptome analysis under abiotic stress in wild type and RNA Polymerase IV mutant |
| GSE71377 |
RNA-seq analysis reveals MAPKKK family members related to drought tolerance in maize |
| GSE71448 |
Dosage effect on genes in maize copy-number alterations |
| GSE71959 |
Dosage effect on small RNA transcripts in maize copy number alterations |
| GSE76533 |
Epigenetic characteristics and gene-expression analysis of Derivative 3-3 de novo centromere in maize |
| GSE77595 |
In planta expression profiles of five Fusarium fujikuroi species complex (FFC) isolates revealed common and different sets of up-regulated genes |
| GSE81344 |
Systems genetics reveals a transcriptional network associated with susceptibility in the maize-gray leaf spot pathosystem |
| GSE83411 |
Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed‐free period |
| GSE84368 |
Genomic features shaping the landscape of meiotic double-strand break hotspots in maize [MNase-Seq] |
| GSE84369 |
Genomic features shaping the landscape of meiotic double-strand break hotspots in maize |
| GSE84455 |
Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation |
| GSE84490 |
RRBS and RNA-seq profiling of maize shoot and tassel primordium |
| GSE88917 |
Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress |
| GSE92406 |
Growth is required for perception of water availability to pattern plant root branches |
| GSE92448 |
Transcriptome profiling of two inbred lines with distinct responses to Gibberella ear rot disease identified candidate genes for resistance in maize |
| GSE93983 |
Genome-wide identification of AGO18b-bound miRNAs and phasiRNAs in maize by cRIP-seq |
| GSE94442 |
Maize and Cercospora zeina transcriptome analysis during gray leaf spot foliar disease |
| GSE99005 |
RNA-Seq analysis of maize lines resistant and susceptible to Cercospora zeina, causal organism of Grey leafspot disease |
| GSE103037 |
GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize |
| GSE103112 |
GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize |
| GSE103833 |
Silencing of Mu elements in maize involves distinct populations of small RNAs and distinct patterns of DNA methylation |
| GSE103876 |
Time series transcriptional profiling of Ustilago maydis infecting Zea mays |
| GSE106642 |
Coordinated regulation of starch synthesis by microRNAs and DNA methylation [BiSulfite-seq] |
| GSE106684 |
Coordinated regulation of starch synthesis by microRNAs and DNA methylation [RNA-seq] |
| GSE106686 |
Coordinated regulation of starch synthesis by microRNAs and DNA methylation |
| GSE107133 |
Transciptomic analysis of maize response to the attack of Sesamia nonagrioides |
| GSE108105 |
Distinguishing reproductive phasiRNAs in grasses from other identically-sized small RNAs using machine learning methods |
| GSE108627 |
RNA-seq sequencing of the transgenic plants leaves at the six-leaf stage |
| GSE108628 |
RNA-seq sequencing of the transgenic plants seeds |
| GSE108630 |
RNA-seq sequencing of the transgenic plants seeds and leaves |
| GSE110060 |
Signalling molecules involved in the communication between maize seed compartments |
| GSE115157 |
Allelic variation at a major QTL for cell wall related traits and coordinated changes in gene expression in maize |
| GSE115796 |
RNAseq of maize stem at three developmental stages |
| GSE117782 |
The dominant and poor penetrant phenotypes of the maize mutation Unstable factor for orange1 are caused by DNA methylation changes at a linked transposon |
| GSE117964 |
High expressed genes enriched with H3K27me3 in maize genome [ChIP-seq] |
| GSE117982 |
High expressed genes enriched with H3K27me3 in maize genome [RNA-seq] |
| GSE117992 |
High expressed genes enriched with H3K27me3 in maize genome |
| GSE118505 |
RNA-Seq mapping enabled quantitative analysis of gene expression differences between WT and rbm48 mutants in Zea mays (Maize). |
| GSE120435 |
small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [RNA-Seq] |
| GSE120436 |
small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [smRNA-Seq] |
| GSE120438 |
small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis |
| GSE124242 |
De novo formation in maize from irradiated materials |
| GSE127525 |
Transcriptome and differential gene expression analysis for nacRNAi and non-transgenic sibling |
| GSE128859 |
Genome-wide analysis of DNA methylation in maize inbred lines |
| GSE130930 |
RNA-seq of maize seeds at different filling stages |
| GSE132113 |
Effects of Maize Organ-specific Drought Stress Response on Yields from Transcriptome Analysis |
| GSE133578 |
The deposition of CENH3 is stringently regulated in Maize |
| GSE137198 |
Maize and Cercospora zeina transcriptome analysis during gray leaf spot foliar disease |
| GSE137715 |
Genetic networks regulating structure and function of the maize shoot apical meristem |
| GSE137780 |
ZmNF-YB16-YC17-YA1 complex participates in the regulation of plant growth and drought resistance in maize |
| GSE145586 |
Evolutionary and functional genomics of DNA methylation in maize domestication and improvement |
| GSE146905 |
RNA sequencing of maize FDL1 mutants |
| GSE147576 |
Tissue-dependent regulation of miRNA activity |
| GSE150446 |
HD-ZIP IV transcription factor OCL4 and 21-nt phasiRNAs are dispensable for male fertility in maize anthers |
| GSE150597 |
Spatiotemporal and cell-type dependent phasiRNA biogenesis in maize male reproduction (RNA-seq2) |
| GSE152074 |
Structure, composition and evolution of the nonvital B chromosome of maize |
| GSE152107 |
Transcriptional analyses of maize leaves in response to high‐density planting |
| GSE171968 |
Transcriptome analysis of maize Gibberella stalk rot |
| GSE172071 |
Transcriptome of two maize lines seedlings show resistance and susceptible to corn smut during infection of Ustilago maydis |
| GSE174508 |
Transcriptome and oxylipin profiling joint analysis reveals the opposite roles of 9-oxylipins and jasmonic acid in maize resistance to Gibberella stalk rot |
| GSE181794 |
Transcriptomic analysis of B73 and zmte1 responding to auxin. |
| GSE183171 |
Single cell RNA sequencing of maize root |
| GSE183302 |
RNA-Seq mapping enabled quantitative analysis of gene expression differences between normal and ded1-ref in Zea mays (Maize) |
| GSE183304 |
Paternal imprinting of dosage-effect defective1 contributes to seed weight xenia in maize |
| GSE210899 |
Genomic survey of NPF and NRT2 transporter gene families in five inbred maize lines and their responses to pathogens infection |
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| Supplementary data files not provided |
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