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Series GSE116966 Query DataSets for GSE116966
Status Public on Aug 08, 2018
Title Characterizing the molecular changes of Basal Cell Carcinoma during vismodegib treatment
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 30297801
Submission date Jul 11, 2018
Last update date Jul 25, 2021
Contact name Robert Piskol
E-mail(s) piskolr@gene.com
Organization name Genentech Inc.
Department Bioinformatics
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (39)
GSM2705153 SAM17865153 LCM BCC + vismo
GSM2705154 SAM17865154 LCM BCC + vismo
GSM2705155 SAM17865155 LCM BCC + vismo
This SuperSeries is composed of the following SubSeries:
GSE101504 Profiling of untreated and residual murine BCC after Hedgehog Pathway Inhibitor
GSE116961 Sorted BCC timecourse after Vismo treatment - MCT, 6d, 14d
GSE116965 ATAC sequencing of sorted BCC cells after vismodegib treatment
Relations
BioProject PRJNA480702

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116966_RAW.tar 4.9 Gb (http)(custom) TAR (of BIGWIG, TSV)
SRA Run SelectorHelp

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