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| Status |
Public on Dec 31, 2019 |
| Title |
Comparative analysis of gene expression in tomato roots during mild and severe potato spindle tuber viroid infection. |
| Organism |
Solanum lycopersicum |
| Experiment type |
Expression profiling by array
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| Summary |
We employed microarray analysis to observe dynamic changes of gene expression profiles in response to mild and severe potato spindle tuber (PSTVd) infection in the roots of tomato cv ‘Rutgers’.
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| Overall design |
Solanum lycopersicum cv 'Rutgers' was infected with mild (M) and severe (S23) PSTVd isolates. Root samples were collected at three phases of disease: i) early stage of symptoms -17 dpi; ii) full spectrum of symptoms – 24 dpi; iii) recovery - 49 dpi. Three independent biological replicates of PSTVd-M, PSTVd-S23 and pUC9 (control) were analised at every time point but two replicates of PSTVd-S23 at 17dpi. Totally 26 samples of RNA were analysed.
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| Contributor(s) |
Więsyk A, Góra-Sochacka A, Fogtman A |
| Citation(s) |
31671783 |
| |
| Submission date |
Mar 12, 2018 |
| Last update date |
Dec 31, 2019 |
| Contact name |
Aneta Więsyk |
| E-mail(s) |
anetaw@ibb.waw.pl
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| Organization name |
Institute of Biochemistry and Biophysics, PAS
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| Street address |
Pawinskiego 5a
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| City |
Warszawa |
| ZIP/Postal code |
02-106 |
| Country |
Poland |
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| Platforms (1) |
| GPL4741 |
[Tomato] Affymetrix Tomato Genome Array |
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| Samples (26)
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| Relations |
| BioProject |
PRJNA437993 |
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