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Platform GPL4741 Query DataSets for GPL4741
Status Public on Jan 11, 2007
Title [Tomato] Affymetrix Tomato Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Solanum lycopersicum
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The comprehensive array consists of over 10,000 L. esculentum probe sets to interrogate over 9,200 L. esculentum transcripts.

Sequence information for this array was selected from public data sources including Lycopersicon esculentum UniGene Build #20 (October 3, 2004) and GenBank® mRNAs up to November 5, 2004.
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=tomato
http://www.affymetrix.com/analysis/index.affx
Submission date Jan 11, 2007
Last update date Dec 24, 2015
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (992) GSM155103, GSM155104, GSM155105, GSM155106, GSM155107, GSM155141 
Series (59)
GSE6736 Trafficking of mRNA from tomato to dodder
GSE9683 Tomato wild type, vector control and transgenic lines expressing InsP 5-ptase: mature fruits, root tips, and leaves
GSE14358 Gene regulation in parthenocarpic tomato fruit

Data table header descriptions
ID Affymetrix Probe Set ID
GB_LIST GenBank Accession Number
GI GenBank GI Number
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
SPOT_ID

Data table
ID GB_LIST GI Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function SPOT_ID
AFFX-BioB-3_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-3 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioB-5_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-5 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioB-M_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-M 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioC-3_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-3 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioC-5_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-5 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioDn-3_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-3 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioDn-5_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-5 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-CreX-3_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-3 6310 // DNA recombination // inferred from electronic annotation /// 6313 // transposition, DNA-mediated // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation -- Control sequence
AFFX-CreX-5_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-5 6310 // DNA recombination // inferred from electronic annotation /// 6313 // transposition, DNA-mediated // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation -- Control sequence
AFFX-DapX-3_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-3 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-DapX-5_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-5 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-DapX-M_at Lycopersicon esculentum Nov 15, 2006 Consensus sequence B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-M 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-Les-actin-3_at BT013524.1 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=actin /DB_XREF=gb:BT013524.1 /DB_XREF=gi:47104939 /FEA=mRNA /DEF=Lycopersicon esculentum clone 132242F, mRNA sequence. BT013524.1 Clone 132242F, mRNA sequence -- Control sequence
AFFX-Les-actin-5_at BT013524.1 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=actin /DB_XREF=gb:BT013524.1 /DB_XREF=gi:47104939 /FEA=mRNA /DEF=Lycopersicon esculentum clone 132242F, mRNA sequence. BT013524.1 Clone 132242F, mRNA sequence -- Control sequence
AFFX-Les-actin-M_at BT013524.1 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=actin /DB_XREF=gb:BT013524.1 /DB_XREF=gi:47104939 /FEA=mRNA /DEF=Lycopersicon esculentum clone 132242F, mRNA sequence. BT013524.1 Clone 132242F, mRNA sequence -- Control sequence
AFFX-Les-ef1a-3_at CK715747 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=ef1a /DB_XREF=gb:CK715747 /DB_XREF=gi:50879576 /DB_XREF=LERSF01K03 /FEA=mRNA /CLONE=LERSF01K03 /UG_TITLE=LeEF-1 mRNA for elongation factor 1 alpha CK715747 EF 1-alpha (AA 1-448) LOC544055 544055 6412 // protein biosynthesis // inferred from electronic annotation /// 6414 // translational elongation // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation 166 // nucleotide binding // inferred from electronic annotation /// 3746 // translation elongation factor activity // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation -- Control sequence
AFFX-Les-ef1a-5_at CK715747 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=ef1a /DB_XREF=gb:CK715747 /DB_XREF=gi:50879576 /DB_XREF=LERSF01K03 /FEA=mRNA /CLONE=LERSF01K03 /UG_TITLE=LeEF-1 mRNA for elongation factor 1 alpha CK715747 EF 1-alpha (AA 1-448) LOC544055 544055 6412 // protein biosynthesis // inferred from electronic annotation /// 6414 // translational elongation // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation 166 // nucleotide binding // inferred from electronic annotation /// 3746 // translation elongation factor activity // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation -- Control sequence
AFFX-Les-ef1a-5_a_at CK715747 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=ef1a /DB_XREF=gb:CK715747 /DB_XREF=gi:50879576 /DB_XREF=LERSF01K03 /FEA=mRNA /CLONE=LERSF01K03 /UG_TITLE=LeEF-1 mRNA for elongation factor 1 alpha CK715747 EF 1-alpha (AA 1-448) LOC544055 544055 6412 // protein biosynthesis // inferred from electronic annotation /// 6414 // translational elongation // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation 166 // nucleotide binding // inferred from electronic annotation /// 3746 // translation elongation factor activity // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation -- Control sequence
AFFX-Les-ef1a-5_x_at CK715747 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=ef1a /DB_XREF=gb:CK715747 /DB_XREF=gi:50879576 /DB_XREF=LERSF01K03 /FEA=mRNA /CLONE=LERSF01K03 /UG_TITLE=LeEF-1 mRNA for elongation factor 1 alpha CK715747 EF 1-alpha (AA 1-448) LOC544055 544055 6412 // protein biosynthesis // inferred from electronic annotation /// 6414 // translational elongation // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation 166 // nucleotide binding // inferred from electronic annotation /// 3746 // translation elongation factor activity // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation -- Control sequence
AFFX-Les-ef1a-M_a_at CK715747 Lycopersicon esculentum Nov 15, 2006 Consensus sequence L. esculentum /GEN=ef1a /DB_XREF=gb:CK715747 /DB_XREF=gi:50879576 /DB_XREF=LERSF01K03 /FEA=mRNA /CLONE=LERSF01K03 /UG_TITLE=LeEF-1 mRNA for elongation factor 1 alpha CK715747 EF 1-alpha (AA 1-448) LOC544055 544055 6412 // protein biosynthesis // inferred from electronic annotation /// 6414 // translational elongation // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation 166 // nucleotide binding // inferred from electronic annotation /// 3746 // translation elongation factor activity // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation -- Control sequence

Total number of rows: 10209

Table truncated, full table size 4299 Kbytes.






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