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Series GSE107854 Query DataSets for GSE107854
Status Public on Sep 04, 2018
Title PRMT5 regulates the homologous recombination DNA repair pathway by controlling the alternative splicing of key epigenetic factors
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We found that PRMT5 deletion or inhibition impairs homologous recombination (HR) DNA repair, leading to DNA damage accumulation, p53 activation, cell cycle arrest and cell death through missplicing of KAT5.
We show that PRMT5 inhibitors and PARP inhibitors have synergistic effects on human acute leukemia cell lines, demonstrating the advantages of combining targeted epigenetic and non-epigenetic inhibitors.
 
Overall design RNA from sorted E14.5 Ter119-/+ mouse fetal liver cells from Vav-cre;PRMT5fl/fl (KO) and PRMT5fl/fl (WT) were subjected to high-throughput RNA sequencing. RNA from sorted LK cells from Mx1-cre;PRMT5fl/fl (KO) and PRMT5fl/fl (WT) collected 7 days after poly(I:C) injections were subjected to high-throughput RNA sequencing.
 
Contributor(s) Hamard P, Daniel K
Citation(s) 30184499
Submission date Dec 08, 2017
Last update date May 15, 2019
Contact name Stephen Nimer
Organization name University of Miami
Department Sylvester Comprehensive Cancer Center
Street address 1120 NW 14th ST
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (14)
GSM2881850 Ter119neg_PRMT5_KO_A
GSM2881851 Ter119neg_PRMT5_KO_B
GSM2881852 Ter119neg_PRMT5_WT_A
Relations
BioProject PRJNA421729
SRA SRP126416

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107854_RSEM.gene.results_2.txt.gz 572.9 Kb (ftp)(http) TXT
GSE107854_RSEM.genes.results.txt.gz 654.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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