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| Status |
Public on Nov 07, 2009 |
| Title |
UW-Madison Saccharomyces cerevisiae 380K tiling array 51mer oligos 2006-10-12 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Saccharomyces cerevisiae |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
Standard NimbleGen synthesis procedures.
|
| Catalog number |
Custom design |
| Support |
glass |
| |
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| |
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| Contributor(s) |
Warren CL, Shor E, Tietjen J, Ansari AZ, Fox CA |
| Submission date |
Nov 04, 2009 |
| Last update date |
Jul 07, 2012 |
| Contact name |
Christopher Lawrence Warren |
| E-mail(s) |
clwarren2@wisc.edu
|
| Organization name |
University of Wisconsin - Madison
|
| Street address |
1400 University Ave
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53706 |
| Country |
USA |
| |
|
| Samples (68)
|
GSM468266, GSM468267, GSM586998, GSM586999, GSM587000, GSM587001
GSM587002, GSM587003, GSM587004, GSM587005, GSM587006, GSM587007, GSM587008, GSM587009, GSM587010, GSM587011, GSM587012, GSM587013, GSM587014, GSM587015, GSM766185, GSM766186, GSM766187, GSM766188, GSM766189, GSM766190, GSM766191, GSM766192, GSM766193, GSM766194, GSM766195, GSM766196, GSM766197, GSM766198, GSM766199, GSM766200, GSM766201, GSM766202, GSM766203, GSM766204, GSM766205, GSM766206, GSM766207, GSM766208, GSM766209, GSM766210, GSM766211, GSM766212, GSM766213, GSM766214, GSM766215, GSM766216, GSM766217, GSM766218, GSM1178757, GSM1178758, GSM1178759, GSM1486124, GSM1486125, GSM1486126, GSM1486127, GSM1486128, GSM1486129, GSM1486130, GSM1486131, GSM5034256, GSM5034257, GSM5034258
|
| Series (10)
|
| GSE18895 |
The Origin Recognition Complex interacts with a subset of metabolic genes tightly linked to origins of replication. |
| GSE23798 |
An integrated model of stress-dependent gene expression in yeast |
| GSE30897 |
Nucleosome occupancy in yeast BY4741and a strain lacking MSN2 and MSN4 responding to 20 min treatment with 0.4mM H2O2 |
| GSE30898 |
Msn2p occupancy dynamics in yeast BY4741 responding to 0.4mM H2O2 over time (0-60 min) |
| GSE30899 |
Gene expression dynamics in yeast BY4741 and a strain lacking MSN2 and MSN4 responding to 0.4mM H2O2 over time (0-60min) |
| GSE30901 |
Dynamic changes to nucleosome occupancy and genomic expression in yeast responding to oxidative stress |
| GSE48440 |
Genome-wide EMSA (gEMSA) of ORC and yeast genomic DNA |
| GSE60613 |
Coordination and interconnectivity in the inferred stress-activated signaling network from yeast |
| GSE60707 |
ChIp-on-chip with Rbp3 in C-ternimal domain (CTD) of Rbp1 mutants upon Nacl Stress in yeast |
| GSE165464 |
The Fkh1 Forkhead Associated Domain promotes ORC binding to a cohort of DNA replication origins in budding yeast |
|
| Relations |
| Alternative to |
GPL13254 |
| Alternative to |
GPL15778 |
| Data table header descriptions |
| ID |
|
| COL_NUM |
Physical column on the microarray (x) |
| ROW_NUM |
Physical row on the microarray (y) |
| SEQUENCE |
Nucleotide sequence of the probe |
| Position |
Position on the chromosome that the Probe_Sequence corresponds to |
| Chromosome |
Chromosome on which the Probe_Sequence appears (17 = Mitochrondria) |
| RANGE_GB |
|
| RANGE_START |
|
| RANGE_END |
|
| Data table |
| ID |
COL_NUM |
ROW_NUM |
SEQUENCE |
Position |
Chromosome |
RANGE_GB |
RANGE_START |
RANGE_END |
| 64289407 |
1 |
1 |
AGAAGATACAGCGAGGTGGTTACCTCTTCCTTTCCTTCTATGACGGATTCT |
323648 |
11 |
NC_001143.6 |
323648 |
323698 |
| 64362060 |
23 |
1 |
ATTTCACAGCCACTTTTGAAGTTTATGCCACACAAGATGTCAACAGCTGTC |
393248 |
9 |
NC_001141.1 |
393248 |
393298 |
| 64377739 |
25 |
1 |
ATTGATAATGTAATAGGATCAATGAATATAAACATATAAAACGGAATGAGG |
476128 |
12 |
NC_001144.3 |
476128 |
476178 |
| 64187779 |
27 |
1 |
CTCGTAGCAGTACTTTTTGGCCTTGTTCACAAATAAGGAGCTGCCAACCAA |
522912 |
7 |
NC_001139.6 |
522912 |
522962 |
| 64487501 |
29 |
1 |
CATACTGCTATTAAGAGAGCCCAAAGTTATTTCATCTAGTTTGTAAGATTC |
961376 |
15 |
NC_001147.4 |
961376 |
961426 |
| 64400430 |
31 |
1 |
TCTGGATGATCAGAAATAGTCATTTATGTAATTTAGTTACGCTTGACTGAT |
1076576 |
7 |
NC_001139.6 |
1076576 |
1076626 |
| 64475409 |
33 |
1 |
CGCCTTCTGGTTTAATTAAACCTACCACGACATCGTATAAGTCCAATATGT |
1393536 |
4 |
NC_001136.6 |
1393536 |
1393586 |
| 64287878 |
35 |
1 |
TAATCGACCTGGAAAACGGCAATAATTTCACTTTGATTAACTGCTCAGAAG |
681984 |
16 |
NC_001148.2 |
681984 |
682034 |
| 64502270 |
37 |
1 |
GTTTTAGCTGATGCAACTTGTAAGTTCGCAACCTGCAACTTACACTTCACC |
570368 |
15 |
NC_001147.4 |
570368 |
570418 |
| 64397673 |
39 |
1 |
CAAAGTTATTATTTGTGGCCACACTGATTGTGGTGGTATAAAGACATGTTT |
560128 |
14 |
NC_001146.3 |
560128 |
560178 |
| 64164686 |
41 |
1 |
TAACGCCTTCCGCTAAAAACTTTTTGATATTTATTTTATTTTTAACCTTTC |
95968 |
10 |
NC_001142.5 |
95968 |
96018 |
| 64271886 |
43 |
1 |
TTTTACTAAGTATGCGCGCATACTGATATATAGATATAAACAAAAATATAC |
152544 |
6 |
NC_001138.3 |
152544 |
152594 |
| 64355392 |
45 |
1 |
GTTATAGGAATACTGACAATGTTCTTGAGCCAGGGAGAACTGAAATTTCCA |
263008 |
13 |
NC_001145.1 |
263008 |
263058 |
| 64170249 |
47 |
1 |
ACCTAACATGGCAGAGGGGTTCTTGGAGATGATATCTCTCAGGGATTCCTT |
158784 |
5 |
NC_001137.1 |
158784 |
158834 |
| 64521249 |
49 |
1 |
GAAGAAATCATTGGAGGCGTCTGTTATTGACAGGAATGAAGAAAATGCGTT |
470048 |
2 |
NC_001134.6 |
470048 |
470098 |
| 64474928 |
51 |
1 |
AAATATTACCGTGTTTATAAAATAAACTGACACCCGGATAATTAAGAAGTG |
1045696 |
15 |
NC_001147.4 |
1045696 |
1045746 |
| 64509045 |
53 |
1 |
ATGTTTGGTGTTTGTTTATTTGTTTATGTGTTTCAGATGTTGAGTAAACAT |
710560 |
12 |
NC_001144.3 |
710560 |
710610 |
| 64251152 |
55 |
1 |
GGCTACTGAATCTTTACACTACTTGAGCTGAGGAGTAAAATTGCATTATTC |
535200 |
8 |
NC_001140.4 |
535200 |
535250 |
| 64327563 |
165 |
1 |
GTGTGTCGCTACCTATCTTGCCAGTTATAGGTGAAGTCTTTTGTGCGTTAG |
424384 |
13 |
NC_001145.1 |
424384 |
424434 |
| 64186665 |
167 |
1 |
TATAATTATTGGTTGATAGACGATAGTGGATTTTTAATTACATTTTGAGGA |
133664 |
8 |
NC_001140.4 |
133664 |
133714 |
Total number of rows: 379876
Table truncated, full table size 38593 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9529.ndf.gz |
12.8 Mb |
(ftp)(http) |
NDF |
| GPL9529_POS_README.txt |
726 b |
(ftp)(http) |
TXT |
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