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Platform GPL8931 Query DataSets for GPL8931
Status Public on Oct 02, 2009
Title Solea senegalensis 5k oligo microarray
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Solea senegalensis
Manufacturer Oryzon Genomics, Barcelona, Spain
Manufacture protocol 10,185 high-quality sequences were obtained from 10 tissue(or stage of development)-specific libraries and were submitted to GenBank (accession numbers: FF281814-FF291996)
The final array design contained 5,087 gene specific Solea senegalensis probes, as well as positive and negative control probes (maize expansin, ZmMYB42, and xyloglucan endo-transglycosylase), a total of 700 per array. These were used to assess detection limits and range, to verify spatial homogeneity, and to determine experimental within-array variation.
Microarray slides, each containing two microarrays, were synthesized by Agilent using ink-jet printing and in situ oligonucleotide synthesis.
 
 
Citation(s) 18973667
Submission date Jul 27, 2009
Last update date Oct 02, 2009
Contact name angela tingaud-sequeira
E-mail(s) angela.tingaud@u-bordeaux1.fr
Organization name Université Bordeaux 1
Lab GPP
Street address avenue des Facultés
City Talence
ZIP/Postal code 33400
Country France
 
Samples (21) GSM433589, GSM433590, GSM433591, GSM433592, GSM433593, GSM433594 
Series (10)
GSE17333 Oogenesis in Solea senegalensis: Vitellogenic versus mature ovaries
GSE17334 Oogenesis in Solea senegalensis: vitellogenic versus atretic ovaries
GSE17335 Oogenesis in Solea senegalensis: mature versus atretic ovaries

Data table header descriptions
ID
GB_ACC GenBank Accession number
CLONE_ID
SEQUENCE oligo probe sequence

Data table
ID GB_ACC CLONE_ID SEQUENCE
CL1000CONTIG1 FF291880 pgsP0030O13 CCGCCCCCCTACGAGTGGGTCTAAAAAGTGCGGAATTAACGTTGCAGTGGGTGGGCTT
CL1001CONTIG1-ENSDARG00000040933 FF285193 pgsP0011L07 AATCCAGCGAGAGCTGCATAATGTTGCTCAGACAGATGTGAGACACATTGACAGGATGGG
CL1002CONTIG1 FF282156 pgsP0002E18 GTTTTACTTACATCTACAGTGGACCTCACATGTATGAATACAGCCTGAGGAGTGGGAGGT
CL1003CONTIG1-ENSDARG00000033500 FF287411 pgsP0018C08 GATCAGCTTCTCAAGTACCAGGGACCAGTCCTGCTGATAAGGAGAACTAAAGATGAGATC
CL1004CONTIG1 FF290529 pgsP0027A13 AGACTTGAGACATCGCCGCTGAAGTCTTGCGGGACTGTGCGCTGTGATGCTAACAGCTAA
CL1005CONTIG1-ENSDARG00000043800 FF288982 pgsP0022K08 CCTTCCCTTTACCCTGTCGTTACTGAGACTTGTAATAAACCTGCAGTGCATATTACCCAT
CL1007CONTIG1 FF284276 pgsP0009A13 GTTATCTTTGTACACCAAAGGCGCGTCATTCCTCTGATCCTTTAGGGACCTGGTTTGCCT
CL1008CONTIG1 FF283807 pgsP0007K04 TACTGGGTCCAATTCTGTGTGCATCTCTGCATTCCATTAAAGTGAGAATGCGTCATAGGT
CL1009CONTIG1 FF284562 pgsP0009O03 TTGAGCAGAGGTGATCCTGCTGTCTATAGCACTAATGAAGTGTTGGAGAGCTGAGGTGAG
CL100CONTIG1 FF285859 pgsP0013K08 GGGTCATCTGCGGATTCACTTCATGCTTCGGCTTGACATATCCCGGCGTAAATTCAGAGG
CL1010CONTIG1-ENSDARG00000039884 FF285740 pgsP0013E17 GGGCCTGTGGACGTGGTACTACGCCGCCCACTGAAACATCTGGAAACGAAAGCCCTTTGC
CL1011CONTIG1 FF283838 pgsP0007L12 AAGTGTACCGTCTCTTTGAATCCCTGGGGTTGGAAATGACGGGGTCAACTTATGTCTGCC
CL1012CONTIG1-ENSDARG00000011462 FF290753 pgsP0027K17 CATCCTCCTCCTGCTGAACGCGAGAGCAGTGGGTTAAAAATAAACTTCAACAGCCATGCT
CL1013CONTIG1 FF288994 pgsP0022K21 TCCTGGTCTTGTGATAGTACCTCACAACAAGGAACCTGAGTACTTCATACAGATAGCACT
CL1014CONTIG1 FF290261 pgsP0026E02 TCATGACCGAGTGAAGCCGCCTGCTCAGATGGTTTGAAACTGGTCTTATTATTCCCTCAT
CL1015CONTIG1 FF286309 pgsP0014P15 AGTCCAGCCCACACACATGTGGAGGGATTGACACCTCAAGATCACCCCTGAATTTGAATG
CL1016CONTIG1 FF283889 pgsP0007N23 ACACTGTGATCGACTGAAGGCTACGTGTTCCTCTCCGTCACTTTAAGTTCTTATTCGGGT
CL1017CONTIG1 FF290485 pgsP0026O11 GTGTATATGGCCATGGCATTGCTTAATGTGTTGGCTGATAGGGTGTAAACAGTATGCTGT
CL1018CONTIG1 FF286524 pgsP0015J05 TGAACTTTTCACCTGCTCATCTGCAGGCATGGCTAGTTAGTGCAAAGTGAAGTACTTGGG
CL1019CONTIG1 FF290835 pgsP0027O14 CTTGCGACCATGATGTCAACGAGATTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATC

Total number of rows: 5087

Table truncated, full table size 529 Kbytes.




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