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Platform GPL7301 Query DataSets for GPL7301
Status Public on Oct 08, 2008
Title Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Danio rerio
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2519F
 
Description
Agilent has developed a genome-wide zebrafish microarray to enable scientists to study gene expression profiling at the global level and enhance our understanding of zebrafish biology and gene functions related to mammalian models.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL6457.
 
Submission date Sep 12, 2008
Last update date Apr 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (399) GSM371857, GSM371870, GSM427269, GSM427285, GSM427286, GSM427287 
Series (32)
GSE14866 Zebrafish von Hippel-Lindau (vhl) tumor suppressor mutants compared to siblings at 7 dpf
GSE17082 Cadmium probe selection experiment for custom array production
GSE17083 Temperature probe selection experiment for custom array production
Relations
Alternative to GPL6457

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
A_15_P100002 A_15_P100002 FALSE NM_200289 NM_200289 555385 siae sialic acid acetylesterase Dr.78570 ENSDART00000059311 ref|NM_200289|ref|NM_001044331|ens|ENSDART00000059311|gb|BC049448 chr18:34938379-34938438 Danio rerio sialic acid acetylesterase (siae), transcript variant 1, mRNA [NM_200289] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) GCTGAAGTCTACCGCAGTATTTCTACTGAGTTCAATAGTTTGCACTTTATGATTATGATT
A_15_P100003 A_15_P100003 FALSE XM_688466 XM_688466 Dr.115494 ENSDART00000115118 ens|ENSDART00000115118|gb|BE017922|tc|TC395883|ref|XM_688466 chr6:22506307-22501861 tensin 1 [Source:HGNC Symbol;Acc:11973] [ENSDART00000115118] CGTTCCAAACACCAACAGCACTATCTAATGCTTAATCTCAGTGAACGGAGGCATGACATC
A_15_P100007 A_15_P100007 FALSE NM_001025179 NM_001025179 574000 tnnt2d troponin T2d, cardiac Dr.88652 ENSDART00000139235 ref|NM_001025179|ens|ENSDART00000139235|ens|ENSDART00000104297|ens|ENSDART00000048642 chr25:20718007-20718066 Danio rerio troponin T2d, cardiac (tnnt2d), mRNA [NM_001025179] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) TGTTTGTTTGATGGAGATACGTTTAAAATCATTTTTCTGAACGTACAAACATGCTCTGGC
A_15_P100008 A_15_P100008 FALSE NM_213001 NM_213001 406274 klhl20 kelch-like 20 (Drosophila) Dr.1761 ENSDART00000111099 ref|NM_213001|ens|ENSDART00000111099|ens|ENSDART00000146624|gb|BC057505 chr2:33844586-33844645 Danio rerio kelch-like 20 (Drosophila) (klhl20), mRNA [NM_213001] GO:0005575(cellular_component)|GO:0008150(biological_process) AACGAACACCTTTGTTTTCTCACAAAACAGTTCTGTGTTCTAATCTTGGTGTTGAAATAC
A_15_P100009 A_15_P100009 FALSE tc|TC397736 chr13:424310-424251 Rep: P47 - Adoxophyes honmai nucleopolyhedrovirus, partial (5%) [TC397736] AGGATTGTTTTTTCGTTTTGAATATCGTAGCCTAAATGTTGTCTTCCATGTGAATACCAC
A_15_P100010 A_15_P100010 FALSE NM_213126 NM_213126 791742 b2ml beta-2-microglobulin, like Dr.77427 ENSDART00000124748 ref|NM_213126|ens|ENSDART00000124748|ens|ENSDART00000139649|gb|BC057435 chr8:53218861-53218920 Danio rerio beta-2-microglobulin, like (b2ml), mRNA [NM_213126] GO:0002474(antigen processing and presentation of peptide antigen via MHC class I)|GO:0006955(immune response)|GO:0042612(MHC class I protein complex) AGCCTGAATGTTCGAGCGGGCACTGATATTTTGTTTTAAATAACTCCACATTTTAAAAAG
A_15_P100011 A_15_P100011 FALSE NM_001002497 NM_001002497 436770 dctn5 dynactin 5 Dr.75282 ENSDART00000010944 ref|NM_001002497|ens|ENSDART00000010944|gb|BC076304|tc|TC422493 chr3:35636242-35636183 Danio rerio dynactin 5 (dctn5), mRNA [NM_001002497] GO:0005575(cellular_component)|GO:0008152(metabolic process)|GO:0016740(transferase activity) AAACTGTACCATTTCTTCAACACTAAACATTTTCTGTATGCAAAGCCAGATTACAGATGG
A_15_P100012 A_15_P100012 FALSE NM_001007415 NM_001007415 492774 glmna glomulin, FKBP associated protein a Dr.9109 ENSDART00000081094 ref|NM_001007415|ens|ENSDART00000081094|ens|ENSDART00000145770|gb|BC085370 chr2:10649114-10649173 Danio rerio glomulin, FKBP associated protein a (glmna), mRNA [NM_001007415] GO:0005575(cellular_component) CTGTGAGGGAAATGTTTCGGCAGTGCTCTTCTCTGATTTTCCTACGTTAAATGATCCCTT
A_15_P100014 A_15_P100014 FALSE NM_001030106 NM_001030106 556909 fbxo22 F-box protein 22 Dr.133228 ENSDART00000075538 ref|NM_001030106|ens|ENSDART00000075538|tc|TC375846 chr7:31301483-31303332 Danio rerio F-box protein 22 (fbxo22), mRNA [NM_001030106] CACTTCTGCAAAAGAGCTTCAGTGACACGGCAATGGAGGAGGCAAGGGTTGAATAATAAT
A_15_P100015 A_15_P100015 FALSE NM_200764 NM_200764 393737 trappc4 trafficking protein particle complex 4 Dr.82687 ENSDART00000033411 ref|NM_200764|ens|ENSDART00000033411|gb|BC059594|tc|TC380759 chr15:9457057-9456998 Danio rerio trafficking protein particle complex 4 (trappc4), mRNA [NM_200764] GO:0005801(cis-Golgi network)|GO:0006810(transport)|GO:0006888(ER to Golgi vesicle-mediated transport) CTGTTACCAGAAAATGAAAAGTCTATACCTTGGATCTGTAGTTTGGGTCCAAAATGTGCT
A_15_P100016 A_15_P100016 FALSE CK362685 Dr.90589 gb|CK362685 Zv9_scaffold3485:174669-174728 AGENCOURT_17185635 NIH_ZGC_4 Danio rerio cDNA clone IMAGE:7088994 5', mRNA sequence [CK362685] AAAGCGTATTGTAGTGGACTAGATTCAGATGTTAGTAGATGTGGTTAGTAGATGTTGTGT
A_15_P100017 A_15_P100017 FALSE XM_692631 569257 si:dkey-65b12.4 si:dkey-65b12.4 ENSDART00000083665 ens|ENSDART00000083665|ens|ENSDART00000147299|tc|TC367556|tc|TC405041 chr5:43405610-43405669 WD repeat domain 66 [Source:HGNC Symbol;Acc:28506] [ENSDART00000083665] GO:0005509(calcium ion binding) GCTATGCTGAAACCAGAAATTATGTGACAGACATCGATCTGGAGGAGTTCATTAGGCTGT
A_15_P100018 A_15_P100018 FALSE tc|TC447534 chr15:24652255-24652198 Rep: Oxidoreductase/nitrogenase, component 1 - Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z), partial (6%) [TC447534] CCTTTGAACTGACTGGTTAATAATATGATCCTGTCTTTATAGTGTCCTTGCACCAGACAC
A_15_P100019 A_15_P100019 FALSE NM_001081748 NM_001081748 558806 cacnb2b calcium channel, voltage-dependent, beta 2b Dr.83051 ENSDART00000126594 ref|NM_001081748|ref|NM_001166324|ens|ENSDART00000126594|ens|ENSDART00000123495 chr2:31216424-31216613 Danio rerio calcium channel, voltage-dependent, beta 2b (cacnb2b), transcript variant 1, mRNA [NM_001081748] GO:0005245(voltage-gated calcium channel activity)|GO:0005575(cellular_component)|GO:0006816(calcium ion transport)|GO:0051925(regulation of calcium ion transport via voltage-gated calcium channel activity)|GO:0070588(calcium ion transmembrane transport) AAAGCTCTGTTTGATTATTTAAACACAGATTTGAAGGAAGATAACTATCACCCGAGTGAC
A_15_P100022 A_15_P100022 FALSE 503713 ppm1k protein phosphatase 1K (PP2C domain containing) ENSDART00000150677 ens|ENSDART00000150677|ens|ENSDART00000145550|tc|TC408796|tc|TC396372 chr1:51112319-51112260 protein phosphatase 1K (PP2C domain containing) [Source:ZFIN;Acc:ZDB-GENE-050306-8] [ENSDART00000150677] GO:0001889(liver development)|GO:0003824(catalytic activity)|GO:0004722(protein serine/threonine phosphatase activity)|GO:0007420(brain development)|GO:0007507(heart development)|GO:0008152(metabolic process)|GO:0031016(pancreas development)|GO:0043066(negative regulation of apoptotic process)|GO:0048565(digestive tract development) ACCAAAGCTTTTCTTGAGGTGGACAAAGCATTAGCGAGGCATCTTCACTTCAGTGCAGAT
A_15_P100023 A_15_P100023 FALSE NM_212624 NM_212624 322605 chpt1 choline phosphotransferase 1 Dr.75843 ENSDART00000016658 ref|NM_212624|ens|ENSDART00000016658|gb|BC045345|tc|TC368025 chr4:16775296-16775237 Danio rerio choline phosphotransferase 1 (chpt1), mRNA [NM_212624] GO:0000139(Golgi membrane)|GO:0004142(diacylglycerol cholinephosphotransferase activity)|GO:0005794(Golgi apparatus)|GO:0006657(CDP-choline pathway)|GO:0008654(phospholipid biosynthetic process)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016740(transferase activity)|GO:0016780(phosphotransferase activity, for other substituted phosphate groups)|GO:0046872(metal ion binding) TGTTGATCTTGTGTGCCTGTTTTATGATGCACTAACTCTGAATGCTTAGAATCATCTCCT
A_15_P100025 A_15_P100025 FALSE NM_201290 NM_201290 116994 cct6a chaperonin containing TCP1, subunit 6A (zeta 1) Dr.6928 ENSDART00000009484 ref|NM_201290|ens|ENSDART00000009484|ens|ENSDART00000137630|gb|BC044393 chr21:40509609-40509550 Danio rerio chaperonin containing TCP1, subunit 6A (zeta 1) (cct6a), mRNA [NM_201290] GO:0000166(nucleotide binding)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0006457(protein folding)|GO:0044267(cellular protein metabolic process)|GO:0051082(unfolded protein binding) CCTTCCAGTCAATTGGTTTATTTAAGAAGTTGTGTTACAGATGCACTGAATCGCAATACA
A_15_P100028 A_15_P100028 FALSE NM_001017542 NM_001017542 554861 actr2b ARP2 actin-related protein 2b homolog (yeast) Dr.43061 ENSDART00000102555 ref|NM_001017542|ens|ENSDART00000102555|gb|BC092187|gb|BC153558 chr13:5643073-5642690 Danio rerio ARP2 actin-related protein 2b homolog (yeast) (actr2b), mRNA [NM_001017542] GO:0000166(nucleotide binding)|GO:0003779(actin binding)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0005856(cytoskeleton)|GO:0008150(biological_process)|GO:0042995(cell projection) ACCAAGAACCGCGAGAAGATCATAGAGGTCATGTTTGAGACATACCAGTTTACAGGCGTT
A_15_P100030 A_15_P100030 FALSE CT652862 556277 cblb Cas-Br-M (murine) ecotropic retroviral transforming sequence b Dr.79863 ENSDART00000137508 ens|ENSDART00000137508|gb|CT652862 chr10:29411593-29411764 Cas-Br-M (murine) ecotropic retroviral transforming sequence b [Source:ZFIN;Acc:ZDB-GENE-030616-417] [ENSDART00000137508] GO:0001784(phosphotyrosine binding)|GO:0004842(ubiquitin-protein ligase activity)|GO:0004871(signal transducer activity)|GO:0005509(calcium ion binding)|GO:0005634(nucleus)|GO:0007166(cell surface receptor signaling pathway)|GO:0008270(zinc ion binding)|GO:0016567(protein ubiquitination)|GO:0023051(regulation of signaling)|GO:0046872(metal ion binding) AGCGCTCAGGTCAGCTCCACAGAGGAGCTGAAATACAATTTTTCGTATTTTGGAAGTGTC
A_15_P100032 A_15_P100032 FALSE BC083244 450056 tbc1d16 TBC1 domain family, member 16 Dr.17359 ENSDART00000053771 ens|ENSDART00000053771|gb|BC083244|ens|ENSDART00000135470|tc|TC375309 chr3:18199602-18199660 TBC1 domain family, member 16 [Source:ZFIN;Acc:ZDB-GENE-041010-179] [ENSDART00000053771] GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process) TGTAGAATTTCAATACCTAATGGGACACCGTTAGCAAGTGTGAGAATGTAAATACAGACT

Total number of rows: 43677

Table truncated, full table size 16659 Kbytes.




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