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Status
Public on Jun 05, 2008
Title
Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [MBNI v10 Entrez Gene ID CDF]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see the Affymetrix website
Description
This array is identical to GPL570 but the data were analyzed with custom CDF environments created by the MBNI - The version 10 entrez gene ID CDF was used.
Contributor(s)
Kort EJ Submission date
Apr 01, 2008
Last update date
Jun 05, 2008
Contact name
Eric Kort
Organization name
Van Andel Research Institute
Street address
333 Bostwick NE
City
Grand Rapids
State/province
MI
ZIP/Postal code
49503
Country
USA
Samples (79)
GSM278765 , GSM278766 , GSM278767 , GSM278768 , GSM278769 , GSM278770
GSM278771 ,
GSM278772 ,
GSM278773 ,
GSM278774 ,
GSM278775 ,
GSM278776 ,
GSM278777 ,
GSM278778 ,
GSM278779 ,
GSM278780 ,
GSM278781 ,
GSM278782 ,
GSM278783 ,
GSM278784 ,
GSM278785 ,
GSM278786 ,
GSM278787 ,
GSM278788 ,
GSM278789 ,
GSM278790 ,
GSM278791 ,
GSM278792 ,
GSM278793 ,
GSM278794 ,
GSM278795 ,
GSM278796 ,
GSM278797 ,
GSM278798 ,
GSM278799 ,
GSM278800 ,
GSM278801 ,
GSM278802 ,
GSM278803 ,
GSM278804 ,
GSM278805 ,
GSM278806 ,
GSM278807 ,
GSM278808 ,
GSM278809 ,
GSM278810 ,
GSM278811 ,
GSM278812 ,
GSM278813 ,
GSM278814 ,
GSM278815 ,
GSM278816 ,
GSM278817 ,
GSM278818 ,
GSM278819 ,
GSM278820 ,
GSM278821 ,
GSM278822 ,
GSM278823 ,
GSM278824 ,
GSM278825 ,
GSM278826 ,
GSM278827 ,
GSM278828 ,
GSM278829 ,
GSM278830 ,
GSM278831 ,
GSM278832 ,
GSM278833 ,
GSM278834 ,
GSM278835 ,
GSM278836 ,
GSM278837 ,
GSM278838 ,
GSM278839 ,
GSM278840 ,
GSM278841 ,
GSM278842 ,
GSM278843 Series (1)
GSE11024 Microarray analaysis of adult and childhood renal tumors.
Relations Alternative to
GPL570 (Alternative CDF[official])
Data table header descriptions ID Gene Gene Symbol
UniGene UniGene Accession
Description Description
Ensembl* Chr Chromosomal Location
Start (bp) Chromosomal Location (start)
End (bp) Chromosomal Location (end)
Strand Chromosomal Location (strand)
ORF Entrez Gene ID
SPOT_ID Affymetrix controls
Data table ID Gene UniGene Description Ensembl* Chr Start (bp) End (bp) Strand ORF SPOT_ID 1
A1BG
Hs.529161
Alpha-1-B glycoprotein
19
63548356
63556669
-1
1 10
NAT2
Hs.2
N-acetyltransferase 2 (arylamine N-acetyltransferase)
8
18293035
18303003
1
10 100
ADA
Hs.654536
Adenosine deaminase
100 1000
CDH2
Hs.464829,Hs.606106
Cadherin 2, type 1, N-cadherin (neuronal)
18
23784934
24011189
-1
1000 10000
AKT3
Hs.498292
V-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)
1
241718158
242080053
-1
10000 10001
MED6
Hs.497353
Mediator complex subunit 6
14
70146559
70146848
1
10001 10002
NR2E3
Hs.187354
Nuclear receptor subfamily 2, group E, member 3
chr15
69893874
69897644
+
10002 10003
NAALAD2
Hs.503560
N-acetylated alpha-linked acidic dipeptidase 2
11
89507491
89565416
1
10003 10004
NAALADL1
Hs.13967
N-acetylated alpha-linked acidic dipeptidase-like 1
11
64568873
64582585
-1
10004 10005
ACOT8
Hs.444776
Acyl-CoA thioesterase 8
chr20
43904068
43911156
-
10005 10006
ABI1
Hs.508148
Abl-interactor 1
10
27075528
27189965
-1
10006 10007
GNPDA1
Hs.633853
Glucosamine-6-phosphate deaminase 1
5
141360422
141372776
-1
10007 10008
KCNE3
Hs.523899
Potassium voltage-gated channel, Isk-related family, member 3
11
73843534
73856248
-1
10008 10009
ZBTB33
Hs.143604
Zinc finger and BTB domain containing 33
X
119268635
119276279
1
10009 1001
CDH3
Hs.461074
Cadherin 3, type 1, P-cadherin (placental)
16
67130715
67158539
1
1001 10010
TANK
Hs.556496
TRAF family member-associated NFKB activator
2
161701712
161800928
1
10010 10011
SRA1
Hs.655927
Steroid receptor RNA activator 1
5
139909936
139918079
-1
10011 10013
HDAC6
Hs.6764
Histone deacetylase 6
X
48545170
48568336
1
10013 10014
HDAC5
Hs.438782
Histone deacetylase 5
17
39509647
39556540
-1
10014 10015
PDCD6IP
Hs.475896
Programmed cell death 6 interacting protein
3
33814561
33886198
1
10015
17699 1507 Kbytes .Supplementary data files not provided
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